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Nickel in PDB 5cd2: The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114

Enzymatic activity of The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114

All present enzymatic activity of The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114:
3.2.1.4;

Protein crystallography data

The structure of The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114, PDB code: 5cd2 was solved by K.Tan, H.Li, M.Endres, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.50 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.563, 67.489, 101.192, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 17.6

Other elements in 5cd2:

The structure of The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114 (pdb code 5cd2). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114, PDB code: 5cd2:

Nickel binding site 1 out of 1 in 5cd2

Go back to Nickel Binding Sites List in 5cd2
Nickel binding site 1 out of 1 in the The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni405

b:59.0
occ:0.62
 O A:HOH763 2.0 22.3 1.0
O A:HOH805 2.1 43.6 1.0
O A:HOH687 2.3 45.1 1.0
NE2 A:HIS155 2.5 22.0 1.0
O A:HOH775 2.6 39.4 1.0
O A:HOH857 2.7 38.9 1.0
CD2 A:HIS155 3.4 20.9 1.0
O A:HOH842 3.5 39.8 1.0
CE1 A:HIS155 3.6 22.1 1.0
O A:HOH790 4.5 45.1 1.0
CG A:HIS155 4.6 18.6 1.0
ND1 A:HIS155 4.6 20.8 1.0
OD1 A:ASP153 4.8 28.5 1.0

Reference:

K.Tan, H.Li, M.Endres, A.Joachimiak. The Crystal Structure of Endo-1,4-D-Glucanase From Vibrio Fischeri ES114 To Be Published.
Page generated: Wed Dec 16 01:40:21 2020

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