Nickel in PDB 5d9g: Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide

The structure of Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide, PDB code: 5d9g was solved by V.Scorsato, J.Sandy, J.Brandao-Neto, H.M.Pereira, J.H.C.Smetana, R.Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.62 / 2.15
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	145.307, 145.307, 95.950, 90.00, 90.00, 120.00
R / Rfree (%)	18.2 / 19.9

The structure of Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Nickel atom in the Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide (pdb code 5d9g). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide, PDB code: 5d9g:

Nickel binding site 1 out of 1 in the Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni303 b:0.1 occ:1.00 N A:SER178 3.9 54.2 1.0 CB A:ALA205 4.0 76.9 1.0 CA A:ALA205 4.0 71.5 1.0 C A:SER177 4.0 67.0 1.0 CD2 A:HIS203 4.1 60.7 1.0 CA A:SER178 4.1 47.3 1.0 N A:ALA205 4.3 59.7 1.0 O A:SER177 4.3 62.9 1.0 C A:SER178 4.4 53.8 1.0 NE1 A:TRP18 4.4 88.8 1.0 CD1 A:TRP18 4.4 96.5 1.0 CD2 A:PHE179 4.5 56.1 1.0 CA A:SER177 4.5 67.6 1.0 NE2 A:HIS203 4.5 54.8 1.0 O A:HOH422 4.7 68.0 1.0 O A:SER178 4.7 50.6 1.0 N A:PHE179 4.9 42.9 1.0 C A:GLU204 5.0 56.1 1.0 CE2 A:PHE179 5.0 57.8 1.0

V.Scorsato, T.B.Lima, G.L.Righetto, N.I.Zanchin, J.Brandao-Neto, J.Sandy, H.D.Pereira, A.J.Ferrari, F.C.Gozzo, J.H.Smetana, R.Aparicio. Crystal Structure of the Human TIP41 Orthologue, Tiprl, Reveals A Novel Fold and A Binding Site For the PP2AC C-Terminus. Sci Rep V. 6 30813 2016.
ISSN: ESSN 2045-2322
PubMed: 27489114
DOI: 10.1038/SREP30813