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Nickel in PDB 5dou: Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form
Enzymatic activity of Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form
All present enzymatic activity of Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form:
6.3.4.16;
6.3.4.16;
Protein crystallography data
The structure of Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form, PDB code: 5dou
was solved by
S.De Cima,
L.M.Polo,
I.Fita,
V.Rubio,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 40.00 / 2.60 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 78.919, 98.558, 214.890, 90.66, 98.65, 90.08 |
| R / Rfree (%) | 19.5 / 22.9 |
Other elements in 5dou:
The structure of Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form also contains other interesting chemical elements:
| Magnesium | (Mg) | 12 atoms |
| Potassium | (K) | 18 atoms |
| Chlorine | (Cl) | 3 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form
(pdb code 5dou). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 4 binding sites of Nickel where determined in the Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form, PDB code: 5dou:
Jump to Nickel binding site number: 1; 2; 3; 4;
In total 4 binding sites of Nickel where determined in the Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form, PDB code: 5dou:
Jump to Nickel binding site number: 1; 2; 3; 4;
Nickel binding site 1 out of 4 in 5dou
Go back to
Nickel Binding Sites List in 5dou
Nickel binding site 1 out
of 4 in the Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form within 5.0Å range:
|
Nickel binding site 2 out of 4 in 5dou
Go back to
Nickel Binding Sites List in 5dou
Nickel binding site 2 out
of 4 in the Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form within 5.0Å range:
|
Nickel binding site 3 out of 4 in 5dou
Go back to
Nickel Binding Sites List in 5dou
Nickel binding site 3 out
of 4 in the Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form within 5.0Å range:
|
Nickel binding site 4 out of 4 in 5dou
Go back to
Nickel Binding Sites List in 5dou
Nickel binding site 4 out
of 4 in the Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 4 of Crystal Structure of Human Carbamoyl Phosphate Synthetase I (CPS1), Ligand-Bound Form within 5.0Å range:
|
Reference:
S.De Cima,
L.M.Polo,
C.Diez-Fernandez,
A.I.Martinez,
J.Cervera,
I.Fita,
V.Rubio.
Structure of Human Carbamoyl Phosphate Synthetase: Deciphering the on/Off Switch of Human Ureagenesis. Sci Rep V. 5 16950 2015.
ISSN: ESSN 2045-2322
PubMed: 26592762
DOI: 10.1038/SREP16950
Page generated: Thu Oct 10 06:20:11 2024
ISSN: ESSN 2045-2322
PubMed: 26592762
DOI: 10.1038/SREP16950
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