Nickel in PDB 5fm8: Structure of the C-Terminally Extended Domain MY4 of Human Myomesin (Space Group P65)

The structure of Structure of the C-Terminally Extended Domain MY4 of Human Myomesin (Space Group P65), PDB code: 5fm8 was solved by S.Pernigo, R.A.Steiner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	84.36 / 2.05
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	97.410, 97.410, 106.150, 90.00, 90.00, 120.00
R / Rfree (%)	19.2 / 21.7

The binding sites of Nickel atom in the Structure of the C-Terminally Extended Domain MY4 of Human Myomesin (Space Group P65) (pdb code 5fm8). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Structure of the C-Terminally Extended Domain MY4 of Human Myomesin (Space Group P65), PDB code: 5fm8:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Structure of the C-Terminally Extended Domain MY4 of Human Myomesin (Space Group P65)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the C-Terminally Extended Domain MY4 of Human Myomesin (Space Group P65) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni1609 b:69.5 occ:1.00 O B:HOH2003 1.9 47.3 1.0 O B:HOH2001 2.1 58.0 1.0 O B:HOH2047 2.3 47.3 1.0 OG B:SER508 2.4 58.4 1.0 O B:HOH2002 2.6 55.5 1.0 CB B:SER508 3.6 55.8 1.0 CA B:SER508 4.7 53.2 1.0 CE B:MET590 4.7 55.5 1.0

Nickel binding site 2 out of 2 in the Structure of the C-Terminally Extended Domain MY4 of Human Myomesin (Space Group P65)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structure of the C-Terminally Extended Domain MY4 of Human Myomesin (Space Group P65) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ni1610 b:57.4 occ:1.00 O C:HOH2002 1.8 48.1 1.0 O C:HOH2021 1.8 47.5 1.0 O C:HOH2020 2.1 54.8 1.0 OG C:SER508 2.7 75.6 0.5 CB C:SER508 3.5 71.8 0.5 OG C:SER508 3.5 70.2 0.5 CB C:SER508 3.8 70.2 0.5 N C:SER508 4.0 69.9 0.5 CA C:SER508 4.3 68.8 0.5 O C:HOH2003 4.3 50.5 1.0 N C:SER508 4.4 69.8 0.5 CA C:SER508 4.4 69.2 0.5 SD C:MET590 4.8 66.8 0.5

S.Pernigo, A.Fukuzawa, A.E.Beedle, M.Holt, A.Round, A.Pandini, S.Garcia-Manyes, M.Gautel, R.A.Steiner. Binding of Myomesin to Obscurin-Like-1 at the Muscle M-Band Provides A Strategy For Isoform-Specific Mechanical Protection. Structure V. 25 107 2017.
ISSN: ISSN 1878-4186
PubMed: 27989621
DOI: 10.1016/J.STR.2016.11.015