Atomistry » Nickel » PDB 5q3m-5q4p » 5q3w
Atomistry »
  Nickel »
    PDB 5q3m-5q4p »
      5q3w »

Nickel in PDB 5q3w: Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 60)

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 60), PDB code: 5q3w was solved by J.A.Newman, H.Aitkenhead, S.Y.Lee, K.Kupinska, N.Burgess-Brown, R.Tallon, T.Krojer, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.96 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.770, 57.280, 115.240, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 22.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 60) (pdb code 5q3w). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 60), PDB code: 5q3w:

Nickel binding site 1 out of 1 in 5q3w

Go back to Nickel Binding Sites List in 5q3w
Nickel binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 60)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 60) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1102

b:18.3
occ:1.00
O7 A:MLI1101 2.1 23.7 1.0
O8 A:MLI1101 2.1 19.1 1.0
OD2 A:ASP815 2.2 20.0 1.0
NE2 A:HIS793 2.2 13.6 1.0
ND1 A:HIS734 2.2 19.1 1.0
NE2 A:HIS732 2.3 20.2 1.0
C3 A:MLI1101 3.0 27.9 1.0
CE1 A:HIS793 3.0 14.6 1.0
CE1 A:HIS734 3.1 19.3 1.0
C2 A:MLI1101 3.1 22.9 1.0
CD2 A:HIS732 3.1 17.2 1.0
CE1 A:HIS732 3.2 18.5 1.0
CG A:ASP815 3.3 17.0 1.0
CD2 A:HIS793 3.3 15.1 1.0
CG A:HIS734 3.3 17.9 1.0
C1 A:MLI1101 3.4 27.8 1.0
CB A:ASP815 3.7 13.6 1.0
CB A:HIS734 3.7 19.3 1.0
O9 A:MLI1101 4.1 28.5 1.0
O6 A:MLI1101 4.2 26.4 1.0
ND1 A:HIS793 4.2 12.7 1.0
NE2 A:HIS734 4.2 20.0 1.0
NE2 A:HIS737 4.2 22.5 1.0
CG A:HIS732 4.3 14.7 1.0
ND1 A:HIS732 4.3 17.2 1.0
CD2 A:HIS737 4.4 23.1 1.0
CG A:HIS793 4.4 12.8 1.0
OD1 A:ASP815 4.4 19.6 1.0
CD2 A:HIS734 4.4 19.3 1.0
CE1 A:HIS994 4.6 15.9 1.0
NE2 A:HIS994 4.7 16.3 1.0
O A:HOH1435 4.9 24.8 1.0
O A:HOH1240 5.0 29.9 1.0

Reference:

J.A.Newman, H.Aitkenhead, S.Y.Lee, K.Kupinska, N.Burgess-Brown, R.Tallon, T.Krojer, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi. Pandda Analysis Group Deposition To Be Published.
Page generated: Wed Dec 16 01:47:33 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy