Atomistry » Nickel » PDB 5q3m-5q4p » 5q4g
Atomistry »
  Nickel »
    PDB 5q3m-5q4p »
      5q4g »

Nickel in PDB 5q4g: Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 81)

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 81), PDB code: 5q4g was solved by J.A.Newman, H.Aitkenhead, S.Y.Lee, K.Kupinska, N.Burgess-Brown, R.Tallon, T.Krojer, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.21 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.209, 57.550, 115.214, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 24.9

Nickel Binding Sites:

The binding sites of Nickel atom in the Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 81) (pdb code 5q4g). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 81), PDB code: 5q4g:

Nickel binding site 1 out of 1 in 5q4g

Go back to Nickel Binding Sites List in 5q4g
Nickel binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 81)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of DCLRE1A After Initial Refinement with No Ligand Modelled (Structure 81) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1102

b:23.1
occ:1.00
O8 A:MLI1101 2.1 25.9 1.0
O7 A:MLI1101 2.1 29.8 1.0
NE2 A:HIS732 2.2 21.1 1.0
OD2 A:ASP815 2.2 21.1 1.0
ND1 A:HIS734 2.3 24.5 1.0
NE2 A:HIS793 2.3 16.6 1.0
C3 A:MLI1101 3.0 36.3 1.0
CE1 A:HIS734 3.1 25.5 1.0
C2 A:MLI1101 3.1 31.8 1.0
CD2 A:HIS732 3.1 18.3 1.0
CE1 A:HIS793 3.1 15.7 1.0
CE1 A:HIS732 3.2 23.3 1.0
CG A:ASP815 3.3 21.6 1.0
CD2 A:HIS793 3.3 18.0 1.0
CG A:HIS734 3.3 22.4 1.0
C1 A:MLI1101 3.4 36.5 1.0
CB A:ASP815 3.7 18.2 1.0
CB A:HIS734 3.7 22.9 1.0
O9 A:MLI1101 4.2 38.8 1.0
NE2 A:HIS734 4.3 25.6 1.0
CG A:HIS732 4.3 18.7 1.0
O6 A:MLI1101 4.3 29.7 1.0
ND1 A:HIS732 4.3 21.4 1.0
ND1 A:HIS793 4.3 16.1 1.0
NE2 A:HIS737 4.3 27.3 1.0
OD1 A:ASP815 4.3 20.4 1.0
CD2 A:HIS737 4.4 24.9 1.0
CD2 A:HIS734 4.4 22.2 1.0
CG A:HIS793 4.4 14.8 1.0
CE1 A:HIS994 4.6 19.2 1.0
NE2 A:HIS994 4.7 19.7 1.0
O A:HOH1239 4.8 30.7 1.0
O A:HOH1356 4.8 24.6 1.0

Reference:

J.A.Newman, H.Aitkenhead, S.Y.Lee, K.Kupinska, N.Burgess-Brown, R.Tallon, T.Krojer, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi. Pandda Analysis Group Deposition To Be Published.
Page generated: Wed Dec 16 01:47:37 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy