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Nickel in PDB 5tbx: Hnrnp A18 Rna Recognition Motif

Protein crystallography data

The structure of Hnrnp A18 Rna Recognition Motif, PDB code: 5tbx was solved by K.M.Coburn, Z.Melville, E.Aligholizadeh, B.M.Roth, K.M.Varney, D.J.Weber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.38 / 1.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.473, 56.149, 72.431, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 24.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Hnrnp A18 Rna Recognition Motif (pdb code 5tbx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Hnrnp A18 Rna Recognition Motif, PDB code: 5tbx:

Nickel binding site 1 out of 1 in 5tbx

Go back to Nickel Binding Sites List in 5tbx
Nickel binding site 1 out of 1 in the Hnrnp A18 Rna Recognition Motif


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Hnrnp A18 Rna Recognition Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni102

b:40.0
occ:1.00
OD1 A:ASP17 2.0 50.4 1.0
OD2 A:ASP74 2.0 34.9 1.0
OD2 A:ASP17 2.0 54.0 1.0
O A:HOH202 2.2 39.8 1.0
CG A:ASP17 2.3 45.6 1.0
O A:HOH242 2.5 49.6 1.0
CG A:ASP74 2.8 30.5 1.0
OD1 A:ASP74 2.9 37.7 1.0
HG A:SER15 3.1 41.2 1.0
O A:HOH253 3.2 59.8 1.0
HE2 A:PHE16 3.5 73.1 1.0
CB A:ASP17 3.8 46.2 1.0
OG A:SER15 3.8 34.3 1.0
H A:ASP17 4.0 46.2 1.0
HB2 A:SER15 4.1 36.1 1.0
HD2 A:PHE16 4.2 81.1 1.0
HB3 A:ASP17 4.2 55.4 1.0
HB2 A:ASP17 4.2 55.4 1.0
CB A:ASP74 4.2 23.4 1.0
CE2 A:PHE16 4.3 60.9 1.0
HB3 A:ASP74 4.5 28.0 1.0
CB A:SER15 4.5 30.1 1.0
HB2 A:ASP74 4.5 28.0 1.0
CA A:ASP17 4.6 40.3 1.0
CD2 A:PHE16 4.6 67.5 1.0
O A:HOH206 4.7 49.4 1.0
N A:ASP17 4.7 38.5 1.0
C A:ASP17 4.7 33.4 1.0
HB3 A:SER15 4.8 36.1 1.0
HG1 A:THR18 4.8 37.7 1.0
H A:THR18 4.9 36.5 1.0
N A:THR18 4.9 30.4 1.0

Reference:

K.Coburn, Z.Melville, E.Aligholizadeh, B.M.Roth, K.M.Varney, F.Carrier, E.Pozharski, D.J.Weber. Crystal Structure of the Human Heterogeneous Ribonucleoprotein A18 Rna-Recognition Motif. Acta Crystallogr F Struct V. 73 209 2017BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 28368279
DOI: 10.1107/S2053230X17003454
Page generated: Wed Dec 16 01:49:09 2020

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