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Nickel in PDB 5tcv: Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid

Enzymatic activity of Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid

All present enzymatic activity of Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid:
1.14.17.4;

Protein crystallography data

The structure of Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid, PDB code: 5tcv was solved by D.M.Gunawardana, Y.Yosaatmadja, I.K.Leung, C.J.Squire, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.96 / 2.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.361, 107.140, 108.019, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 29.1

Nickel Binding Sites:

The binding sites of Nickel atom in the Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid (pdb code 5tcv). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid, PDB code: 5tcv:

Nickel binding site 1 out of 1 in 5tcv

Go back to Nickel Binding Sites List in 5tcv
Nickel binding site 1 out of 1 in the Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni401

b:59.2
occ:1.00
O A:1AC402 1.9 69.0 1.0
O A:HOH601 2.0 60.4 1.0
OD1 A:ASP179 2.1 56.0 1.0
NE2 A:HIS177 2.2 59.0 1.0
NE2 A:HIS234 2.2 57.6 1.0
N A:1AC402 2.4 62.6 1.0
C A:1AC402 2.7 73.6 1.0
CG A:ASP179 3.0 55.3 1.0
CA A:1AC402 3.0 70.0 1.0
CE1 A:HIS177 3.0 59.4 1.0
CD2 A:HIS234 3.1 56.5 1.0
CE1 A:HIS234 3.1 56.4 1.0
CD2 A:HIS177 3.2 59.0 1.0
OD2 A:ASP179 3.2 55.6 1.0
OXT A:1AC402 3.7 78.8 1.0
CB A:1AC402 4.1 70.4 1.0
ND1 A:HIS177 4.2 58.7 1.0
ND1 A:HIS234 4.2 56.6 1.0
CG A:HIS234 4.2 57.2 1.0
CG A:HIS177 4.3 58.7 1.0
CB A:ASP179 4.4 55.6 1.0
CG A:1AC402 4.5 70.5 1.0
CA A:ASP179 4.9 55.4 1.0
N A:ASP179 4.9 55.0 1.0

Reference:

D.M.Gunawardana, J.Arabshahi, Y.Yosaatmadja, J.Reynisson, C.J.Squire, I.K.Leung. Acc Oxidase Complex with Substrate 1-Aminocyclopropane-1-Carboxylic Acid To Be Published.
Page generated: Wed Dec 16 01:49:09 2020

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