Nickel in PDB 6caz: Crystal Structure of A Peptide Deformylase From Legionella Pneumophila

Enzymatic activity of Crystal Structure of A Peptide Deformylase From Legionella Pneumophila

All present enzymatic activity of Crystal Structure of A Peptide Deformylase From Legionella Pneumophila:
3.5.1.88;

Protein crystallography data

The structure of Crystal Structure of A Peptide Deformylase From Legionella Pneumophila, PDB code: 6caz was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	45.83 / 1.50
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	38.210, 50.900, 105.330, 90.00, 90.00, 90.00
*R / R_free (%)*	16.6 / 19.3

Other elements in 6caz:

The structure of Crystal Structure of A Peptide Deformylase From Legionella Pneumophila also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of A Peptide Deformylase From Legionella Pneumophila (pdb code 6caz). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of A Peptide Deformylase From Legionella Pneumophila, PDB code: 6caz:

Nickel binding site 1 out of 1 in 6caz

Go back to

Nickel Binding Sites List in 6caz

Nickel binding site 1 out of 1 in the Crystal Structure of A Peptide Deformylase From Legionella Pneumophila

Mono view

Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Peptide Deformylase From Legionella Pneumophila within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ni203 b:11.0 occ:1.00	NE2	A:HIS133	2.0	11.2	1.0
	NE2	A:HIS137	2.1	10.1	1.0
	SG	A:CYS91	2.3	10.4	1.0
	CL	A:CL202	2.3	13.7	1.0
	CE1	A:HIS137	3.0	11.0	1.0
	CE1	A:HIS133	3.0	11.4	1.0
	CD2	A:HIS133	3.0	11.9	1.0
	CD2	A:HIS137	3.2	10.1	1.0
	CB	A:CYS91	3.3	10.4	1.0
	NE2	A:GLN51	3.5	11.6	1.0
	O	A:HOH415	3.7	12.3	1.0
	CA	A:CYS91	3.7	10.3	1.0
	O	A:HOH303	3.7	19.7	1.0
	N	A:LEU92	4.0	12.0	1.0
	CD	A:GLN51	4.0	11.4	1.0
	ND1	A:HIS133	4.1	11.3	1.0
	ND1	A:HIS137	4.1	9.7	1.0
	OE1	A:GLN51	4.2	11.4	1.0
	CG	A:HIS133	4.2	10.9	1.0
	CG	A:HIS137	4.3	9.1	1.0
	C	A:CYS91	4.3	12.7	1.0
	O	A:HOH402	4.6	12.2	1.0
	N	A:SER93	4.7	11.0	1.0
	O	A:GLY90	4.8	12.3	1.0
	N	A:CYS91	5.0	11.8	1.0

Reference:

T.E.Edwards, P.S.Horanyi, D.Lorimer, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Peptide Deformylase From Legionella Pneumophila To Be Published.

Page generated: Wed Dec 16 01:50:39 2020

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