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Nickel in PDB 6e85: 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae.

Enzymatic activity of 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae.

All present enzymatic activity of 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae.:
1.1.1.262;

Protein crystallography data

The structure of 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae., PDB code: 6e85 was solved by G.Minasov, L.Shuvalova, I.Dubrovska, O.Kiryukhina, M.Endres, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.67 / 1.25
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 97.355, 76.216, 92.113, 90.00, 106.78, 90.00
R / Rfree (%) 11.4 / 13.9

Other elements in 6e85:

The structure of 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae. (pdb code 6e85). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae., PDB code: 6e85:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 6e85

Go back to Nickel Binding Sites List in 6e85
Nickel binding site 1 out of 2 in the 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni401

b:16.6
occ:0.90
 NE2 A:HIS168 2.0 17.1 1.0
O A:HOH736 2.1 21.4 1.0
O A:HOH667 2.1 19.7 1.0
O B:HOH754 2.1 21.3 1.0
NE2 A:HIS267 2.1 17.5 1.0
NE2 B:HIS212 2.1 16.8 1.0
CE1 B:HIS212 3.0 18.7 1.0
CE1 A:HIS168 3.0 18.1 1.0
CD2 A:HIS168 3.0 17.1 1.0
CE1 A:HIS267 3.1 14.9 1.0
CD2 A:HIS267 3.1 14.5 1.0
CD2 B:HIS212 3.2 16.1 1.0
ND1 A:HIS168 4.2 18.5 1.0
CG A:HIS168 4.2 16.4 1.0
ND1 B:HIS212 4.2 19.1 1.0
ND1 A:HIS267 4.2 13.6 1.0
O A:HOH842 4.3 35.7 0.7
CG A:HIS267 4.3 13.0 1.0
NE2 A:HIS271 4.3 18.0 1.0
O A:HOH887 4.3 35.4 1.0
CG B:HIS212 4.3 16.4 1.0
O B:HOH867 4.3 34.3 0.5
O A:HOH569 4.3 27.7 1.0
CD2 A:HIS271 4.4 16.6 1.0

Nickel binding site 2 out of 2 in 6e85

Go back to Nickel Binding Sites List in 6e85
Nickel binding site 2 out of 2 in the 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4- Phosphate Dehydrogenase From Klebsiella Pneumoniae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni401

b:15.4
occ:0.90
 O B:HOH659 2.0 19.5 1.0
O B:HOH739 2.1 21.1 1.0
NE2 B:HIS168 2.1 16.5 1.0
O B:HOH766 2.1 21.9 1.0
NE2 B:HIS267 2.1 15.2 1.0
NE2 A:HIS212 2.1 18.2 1.0
CE1 A:HIS212 3.0 20.3 1.0
CD2 B:HIS168 3.1 15.8 1.0
CE1 B:HIS267 3.1 14.9 1.0
CE1 B:HIS168 3.1 18.0 1.0
CD2 B:HIS267 3.2 14.1 1.0
CD2 A:HIS212 3.2 18.0 1.0
O B:HOH819 4.1 28.2 0.5
NE2 B:HIS271 4.1 15.8 1.0
ND1 A:HIS212 4.2 20.8 1.0
O B:HOH501 4.2 22.2 0.5
ND1 B:HIS168 4.2 19.0 1.0
CG B:HIS168 4.2 15.2 1.0
ND1 B:HIS267 4.2 13.4 1.0
CG B:HIS267 4.3 12.2 1.0
CG A:HIS212 4.3 16.9 1.0
CD2 B:HIS271 4.3 14.2 1.0
OD2 B:ASP297 4.3 56.2 0.5
O A:HOH589 4.8 35.5 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, O.Kiryukhina, M.Endres, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.25 Angstrom Resolution Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Klebsiella Pneumoniae. To Be Published.
Page generated: Wed Dec 16 01:50:44 2020

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