Nickel in PDB 6f5n: Nickel-Bound Crystal Structure of A GB1 Variant

The structure of Nickel-Bound Crystal Structure of A GB1 Variant, PDB code: 6f5n was solved by U.Rothlisberger, E.Bozkurt, R.Hovius, M.A.S.Perez, N.J.Browning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.70 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	26.680, 59.328, 75.729, 90.00, 90.00, 90.00
R / Rfree (%)	25.7 / 35.6

The binding sites of Nickel atom in the Nickel-Bound Crystal Structure of A GB1 Variant (pdb code 6f5n). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Nickel-Bound Crystal Structure of A GB1 Variant, PDB code: 6f5n:

Nickel binding site 1 out of 1 in the Nickel-Bound Crystal Structure of A GB1 Variant


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Nickel-Bound Crystal Structure of A GB1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni101 b:22.3 occ:1.00 OE1 A:GLU32 1.8 14.2 1.0 NE2 A:HIS28 2.0 24.4 1.0 NE2 B:HIS28 2.1 25.4 1.0 OE1 B:GLU32 2.1 24.4 1.0 O B:HOH115 2.3 12.5 1.0 O B:HOH112 2.3 9.7 1.0 CD A:GLU32 2.7 17.4 1.0 CE1 A:HIS28 2.9 31.5 1.0 CD2 A:HIS28 3.0 23.8 1.0 CE1 B:HIS28 3.0 19.6 1.0 OE2 A:GLU32 3.1 13.4 1.0 CD2 B:HIS28 3.1 22.0 1.0 CD B:GLU32 3.2 22.5 1.0 OE2 B:GLU32 3.6 24.1 1.0 ND1 A:HIS28 3.9 23.1 1.0 CG A:HIS28 4.0 29.3 1.0 CG A:GLU32 4.1 19.9 1.0 ND1 B:HIS28 4.1 14.2 1.0 CG B:HIS28 4.2 12.8 1.0 CE2 B:PHE57 4.5 18.5 1.0 CB A:GLU32 4.5 28.5 1.0 CG B:GLU32 4.5 16.6 1.0 CE2 A:PHE57 4.7 30.0 1.0 CB B:GLU32 4.9 14.9 1.0

E.Bozkurt, R.Hovius, N.J.Browning, M.A.S.Perez, U.Rothlisberger. Nickel-Mediated Self-Assembly of An Ultrastable GB1 Variant To Be Published.