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Nickel in PDB 6hy6: Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

Enzymatic activity of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

All present enzymatic activity of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl):
3.2.1.17;

Protein crystallography data

The structure of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy6 was solved by L.Vandebroek, L.Van Meervelt, T.N.Parac-Vogt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.70 / 1.87
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.937, 78.937, 37.272, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.2

Other elements in 6hy6:

The structure of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) also contains other interesting chemical elements:

Tungsten (W) 17 atoms
Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) (pdb code 6hy6). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy6:

Nickel binding site 1 out of 1 in 6hy6

Go back to Nickel Binding Sites List in 6hy6
Nickel binding site 1 out of 1 in the Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Ni(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni201

b:16.3
occ:0.38
NI1 B:GXZ201 0.0 16.3 0.4
O8L B:GXZ201 2.0 19.8 0.4
O8 B:GXZ201 2.0 23.6 0.4
OSL B:GXZ201 2.1 22.3 0.4
O36 B:GXZ201 2.1 26.1 0.4
O29 B:GXZ201 2.4 25.5 0.4
W9L B:GXZ201 3.3 25.9 0.4
W9 B:GXZ201 3.4 26.5 0.4
P2 B:GXZ201 3.5 27.9 0.4
O17 B:GXZ201 3.6 24.9 0.4
W5L B:GXZ201 3.7 23.1 0.4
W5 B:GXZ201 3.7 22.8 0.4
O13 B:GXZ201 3.7 17.0 0.4
ONL B:GXZ201 3.7 23.8 0.4
OML B:GXZ201 3.8 20.7 0.4
O28 B:GXZ201 3.8 21.8 0.4
O30 B:GXZ201 3.9 24.2 0.4
OCL B:GXZ201 4.5 18.2 0.4
O14 B:GXZ201 4.6 23.8 0.4
O3L B:GXZ201 4.6 22.5 0.4
O3 B:GXZ201 4.6 20.7 0.4
OJL B:GXZ201 4.7 25.7 0.4
O4L B:GXZ201 4.8 23.8 0.4
O22 B:GXZ201 4.8 29.2 0.4
O4 B:GXZ201 4.8 22.9 0.4
O31 B:GXZ201 4.9 24.1 0.4
W4L B:GXZ201 5.0 22.5 0.4

Reference:

L.Vandebroek, Y.Mampaey, S.Antonyuk, L.Van Meervelt, T.N.Parac-Vogt. Noncovalent Complexes Formed Between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem 2019.
ISSN: ESSN 1099-0682
DOI: 10.1002/EJIC.201801113
Page generated: Wed Dec 16 01:51:50 2020

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