Nickel in PDB 6j6f: Ligand Binding Domain 1 and 2 of Talaromyces Marneffei MP1 Protein

The structure of Ligand Binding Domain 1 and 2 of Talaromyces Marneffei MP1 Protein, PDB code: 6j6f was solved by W.H.Lam, H.Zhang, Q.Hao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 4.20
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	146.393, 146.393, 148.611, 90.00, 90.00, 90.00
R / Rfree (%)	29.4 / 35

The binding sites of Nickel atom in the Ligand Binding Domain 1 and 2 of Talaromyces Marneffei MP1 Protein (pdb code 6j6f). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Ligand Binding Domain 1 and 2 of Talaromyces Marneffei MP1 Protein, PDB code: 6j6f:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Ligand Binding Domain 1 and 2 of Talaromyces Marneffei MP1 Protein


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Ligand Binding Domain 1 and 2 of Talaromyces Marneffei MP1 Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni400 b:94.9 occ:1.00 NE2 A:HIS315 1.9 0.2 1.0 CE1 A:HIS315 2.6 0.6 1.0 NE2 B:HIS114 2.8 0.2 1.0 CD2 A:HIS315 2.8 0.6 1.0 CD2 B:HIS114 3.5 0.7 1.0 ND1 A:HIS315 3.6 0.4 1.0 CG A:HIS315 3.7 0.5 1.0 CE1 B:HIS114 3.7 0.7 1.0 CG B:HIS114 4.6 0.3 1.0 ND1 B:HIS114 4.7 0.2 1.0

Nickel binding site 2 out of 2 in the Ligand Binding Domain 1 and 2 of Talaromyces Marneffei MP1 Protein


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Ligand Binding Domain 1 and 2 of Talaromyces Marneffei MP1 Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni400 b:84.6 occ:1.00 NE2 B:HIS315 1.9 0.9 1.0 CE1 B:HIS315 2.6 1.0 1.0 CD2 B:HIS315 3.1 0.8 1.0 NE2 A:HIS114 3.1 0.9 1.0 CD2 A:HIS114 3.6 0.7 1.0 ND1 B:HIS315 3.8 0.1 1.0 CG B:HIS315 4.1 0.6 1.0 CE1 A:HIS114 4.3 0.8 1.0 CG A:HIS114 4.9 0.5 1.0

W.H.Lam, K.H.Sze, Y.Ke, M.K.Tse, H.Zhang, P.C.Y.Woo, S.K.P.Lau, C.C.Y.Lau, S.Xu, P.M.Lai, T.Zhou, S.V.Antonyuk, R.Y.T.Kao, K.Y.Yuen, Q.Hao. Talaromyces MARNEFFEIMP1 Protein, A Novel Virulence Factor, Carries Two Arachidonic Acid-Binding Domains to Suppress Inflammatory Responses in Hosts. Infect. Immun. V. 87 2019.
ISSN: ESSN 1098-5522
PubMed: 30670555
DOI: 10.1128/IAI.00679-18