Nickel in PDB 6jfc: Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa

All present enzymatic activity of Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa:
3.5.1.88;

The structure of Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa, PDB code: 6jfc was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.99 / 2.04
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	44.020, 122.634, 148.142, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 25.1

The binding sites of Nickel atom in the Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa (pdb code 6jfc). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa, PDB code: 6jfc:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni202 b:57.5 occ:1.00 SG A:CYS103 2.2 38.2 1.0 NE2 A:HIS145 2.2 34.6 1.0 NE2 A:HIS149 2.3 33.3 1.0 O2 A:BB2201 2.8 48.2 1.0 N1 A:BB2201 2.9 57.4 1.0 O4 A:BB2201 3.1 59.9 1.0 CE1 A:HIS149 3.1 35.7 1.0 CD2 A:HIS145 3.1 35.8 1.0 C3 A:BB2201 3.2 63.8 1.0 CB A:CYS103 3.2 33.1 1.0 CE1 A:HIS145 3.3 33.2 1.0 CD2 A:HIS149 3.5 32.4 1.0 O A:HOH323 3.5 33.4 1.0 NE2 A:GLN55 3.7 33.0 1.0 CA A:CYS103 3.8 35.2 1.0 CD A:GLN55 4.3 37.2 1.0 CG A:HIS145 4.3 32.9 1.0 OE1 A:GLN55 4.3 36.3 1.0 ND1 A:HIS145 4.3 33.8 1.0 ND1 A:HIS149 4.3 35.2 1.0 C5 A:BB2201 4.4 62.9 1.0 C6 A:BB2201 4.4 67.3 1.0 N A:LEU104 4.5 39.8 1.0 CG A:HIS149 4.5 31.7 1.0 O A:HOH317 4.6 29.1 1.0 C A:CYS103 4.6 40.3 1.0 C7 A:BB2201 4.7 60.0 1.0 O A:GLY102 4.9 41.5 1.0 OE2 A:GLU146 4.9 55.0 1.0

Nickel binding site 2 out of 2 in the Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni202 b:64.1 occ:1.00 SG B:CYS103 2.1 39.8 1.0 NE2 B:HIS149 2.2 37.0 1.0 NE2 B:HIS145 2.5 38.1 1.0 O2 B:BB2201 2.6 53.2 1.0 CE1 B:HIS149 2.9 38.4 1.0 N1 B:BB2201 3.0 51.8 1.0 CB B:CYS103 3.1 33.2 1.0 O4 B:BB2201 3.2 70.0 1.0 C3 B:BB2201 3.3 63.2 1.0 NE2 B:GLN55 3.4 29.9 1.0 O B:HOH321 3.4 27.9 1.0 CD2 B:HIS149 3.4 38.2 1.0 CD2 B:HIS145 3.4 39.8 1.0 CE1 B:HIS145 3.5 39.2 1.0 CA B:CYS103 3.8 34.0 1.0 CD B:GLN55 4.1 29.9 1.0 ND1 B:HIS149 4.1 36.6 1.0 OE1 B:GLN55 4.3 31.5 1.0 CG B:HIS149 4.4 32.6 1.0 N B:LEU104 4.4 36.8 1.0 C5 B:BB2201 4.5 66.2 1.0 O B:HOH312 4.5 35.1 1.0 C B:CYS103 4.6 34.4 1.0 ND1 B:HIS145 4.6 34.2 1.0 CG B:HIS145 4.6 35.8 1.0 C6 B:BB2201 4.7 65.5 1.0 O B:GLY102 4.7 34.4 1.0 OE2 B:GLU146 4.7 45.3 1.0

I.H.Lee, T.H.Ho, L.W.Kang. Actinonin Bound Crystal Structure of Class I Type B Peptide Deformylase From Pseudomonas Aeruginosa To Be Published.