Atomistry » Nickel » PDB 6ikt-6lrx » 6k73
Atomistry »
  Nickel »
    PDB 6ikt-6lrx »
      6k73 »

Nickel in PDB 6k73: Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis

Protein crystallography data

The structure of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis, PDB code: 6k73 was solved by R.Bao, L.H.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.52 / 2.77
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 217.158, 217.158, 177.091, 90.00, 90.00, 120.00
R / Rfree (%) 22.5 / 26

Nickel Binding Sites:

The binding sites of Nickel atom in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis (pdb code 6k73). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 4 binding sites of Nickel where determined in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis, PDB code: 6k73:
Jump to Nickel binding site number: 1; 2; 3; 4;

Nickel binding site 1 out of 4 in 6k73

Go back to Nickel Binding Sites List in 6k73
Nickel binding site 1 out of 4 in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni302

b:85.7
occ:0.93
N A:SER74 3.4 66.2 1.0
OG A:SER74 3.7 72.7 1.0
CB A:SER74 3.8 40.9 1.0
CA A:LYS73 3.9 55.4 1.0
C A:LYS73 3.9 57.2 1.0
CD A:LYS73 4.0 50.9 1.0
O A:SER72 4.1 71.1 1.0
CA A:SER74 4.2 51.0 1.0
CB A:LYS73 4.7 49.6 1.0
O A:LYS73 4.9 58.2 1.0
N A:LYS73 4.9 52.4 1.0
CG A:LYS73 4.9 39.9 1.0
C A:SER72 4.9 54.0 1.0
CE A:LYS73 5.0 77.6 1.0
O A:SER74 5.0 58.9 1.0

Nickel binding site 2 out of 4 in 6k73

Go back to Nickel Binding Sites List in 6k73
Nickel binding site 2 out of 4 in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni301

b:93.5
occ:0.98
CE B:LYS73 3.3 75.0 1.0
CD B:LYS73 3.7 61.4 1.0
N B:SER74 3.8 47.4 1.0
CA B:LYS73 4.3 46.2 1.0
CB B:SER74 4.3 32.8 1.0
OG B:SER74 4.4 55.1 1.0
O B:SER72 4.5 53.1 1.0
C B:LYS73 4.5 44.2 1.0
CA B:SER74 4.6 42.2 1.0
CG B:LYS73 4.7 52.3 1.0
NZ B:LYS73 4.7 82.9 1.0
CB B:LYS73 4.9 45.3 1.0
O B:SER74 4.9 48.0 1.0

Nickel binding site 3 out of 4 in 6k73

Go back to Nickel Binding Sites List in 6k73
Nickel binding site 3 out of 4 in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni401

b:88.5
occ:1.00
N C:ALA92 3.7 28.4 1.0
N C:THR91 3.8 38.4 1.0
CA C:GLY90 3.8 50.6 1.0
CB C:ALA92 3.9 32.8 1.0
OG1 C:THR91 3.9 68.8 1.0
C C:GLY90 4.2 48.7 1.0
CA C:ALA92 4.4 30.6 1.0
CA C:THR91 4.6 37.6 1.0
C C:THR91 4.7 34.0 1.0
CB C:THR91 4.9 40.7 1.0

Nickel binding site 4 out of 4 in 6k73

Go back to Nickel Binding Sites List in 6k73
Nickel binding site 4 out of 4 in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 4 of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni405

b:0.1
occ:0.50
CG C:PRO328 4.6 84.4 1.0

Reference:

R.Bao, L.H.He. Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis To Be Published.
Page generated: Wed Dec 16 01:52:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy