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Nickel in PDB 6k73: Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis

Protein crystallography data

The structure of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis, PDB code: 6k73 was solved by R.Bao, L.H.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.52 / 2.77
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 217.158, 217.158, 177.091, 90.00, 90.00, 120.00
R / Rfree (%) 22.5 / 26

Nickel Binding Sites:

The binding sites of Nickel atom in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis (pdb code 6k73). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 4 binding sites of Nickel where determined in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis, PDB code: 6k73:
Jump to Nickel binding site number: 1; 2; 3; 4;

Nickel binding site 1 out of 4 in 6k73

Go back to Nickel Binding Sites List in 6k73
Nickel binding site 1 out of 4 in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni302

b:85.7
occ:0.93
N A:SER74 3.4 66.2 1.0
OG A:SER74 3.7 72.7 1.0
CB A:SER74 3.8 40.9 1.0
CA A:LYS73 3.9 55.4 1.0
C A:LYS73 3.9 57.2 1.0
CD A:LYS73 4.0 50.9 1.0
O A:SER72 4.1 71.1 1.0
CA A:SER74 4.2 51.0 1.0
CB A:LYS73 4.7 49.6 1.0
O A:LYS73 4.9 58.2 1.0
N A:LYS73 4.9 52.4 1.0
CG A:LYS73 4.9 39.9 1.0
C A:SER72 4.9 54.0 1.0
CE A:LYS73 5.0 77.6 1.0
O A:SER74 5.0 58.9 1.0

Nickel binding site 2 out of 4 in 6k73

Go back to Nickel Binding Sites List in 6k73
Nickel binding site 2 out of 4 in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni301

b:93.5
occ:0.98
CE B:LYS73 3.3 75.0 1.0
CD B:LYS73 3.7 61.4 1.0
N B:SER74 3.8 47.4 1.0
CA B:LYS73 4.3 46.2 1.0
CB B:SER74 4.3 32.8 1.0
OG B:SER74 4.4 55.1 1.0
O B:SER72 4.5 53.1 1.0
C B:LYS73 4.5 44.2 1.0
CA B:SER74 4.6 42.2 1.0
CG B:LYS73 4.7 52.3 1.0
NZ B:LYS73 4.7 82.9 1.0
CB B:LYS73 4.9 45.3 1.0
O B:SER74 4.9 48.0 1.0

Nickel binding site 3 out of 4 in 6k73

Go back to Nickel Binding Sites List in 6k73
Nickel binding site 3 out of 4 in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni401

b:88.5
occ:1.00
N C:ALA92 3.7 28.4 1.0
N C:THR91 3.8 38.4 1.0
CA C:GLY90 3.8 50.6 1.0
CB C:ALA92 3.9 32.8 1.0
OG1 C:THR91 3.9 68.8 1.0
C C:GLY90 4.2 48.7 1.0
CA C:ALA92 4.4 30.6 1.0
CA C:THR91 4.6 37.6 1.0
C C:THR91 4.7 34.0 1.0
CB C:THR91 4.9 40.7 1.0

Nickel binding site 4 out of 4 in 6k73

Go back to Nickel Binding Sites List in 6k73
Nickel binding site 4 out of 4 in the Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 4 of Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni405

b:0.1
occ:0.50
CG C:PRO328 4.6 84.4 1.0

Reference:

R.Bao, L.H.He. Chaperone-Tip Adhesin Complex Is Vital For Synergistic Activation of Cfa/I Fimbriae Biogenesis To Be Published.
Page generated: Thu Oct 10 08:35:30 2024

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