Nickel in PDB 6kh4: Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes

Enzymatic activity of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes

Protein crystallography data

Other elements in 6kh4:

Nickel Binding Sites:

Nickel binding site 1 out of 3 in 6kh4

Nickel Binding Sites List in 6kh4

Nickel binding site 1 out of 3 in the Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni202 b:85.9 occ:1.00 ND1 A:HIS159 2.8 57.7 0.9 O A:HOH364 3.1 62.6 0.5 O A:HOH320 3.3 37.4 1.0 HE1 A:HIS159 3.5 53.6 0.9 CE1 A:HIS159 3.6 44.7 0.9 HG21 A:THR93 3.6 39.6 1.0 HA A:HIS159 3.7 61.3 0.9 HB3 A:HIS159 3.9 58.1 0.9 CG A:HIS159 3.9 62.5 0.9 HG1 A:THR93 4.2 41.2 1.0 CB A:HIS159 4.3 48.5 0.9 HG23 A:THR93 4.3 39.6 1.0 CG2 A:THR93 4.4 33.0 1.0 CA A:HIS159 4.4 51.1 0.9 NE2 A:HIS159 4.8 65.6 0.9 H A:HIS160 4.9 56.3 1.0 OG1 A:THR93 4.9 34.3 1.0 CD2 A:HIS159 5.0 55.3 0.9 OE2 A:GLU96 5.0 66.9 1.0

Nickel binding site 2 out of 3 in 6kh4

Nickel Binding Sites List in 6kh4

Nickel binding site 2 out of 3 in the Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni203 b:0.2 occ:1.00 OG A:SER142 2.6 34.2 0.5 HG A:SER142 2.8 38.0 0.5 HB2 A:SER142 2.9 25.6 0.5 OE1 A:GLU138 3.2 70.3 1.0 HG A:SER142 3.2 41.0 0.5 OG A:SER142 3.2 31.7 0.5 HB3 A:SER142 3.3 25.7 0.5 CB A:SER142 3.5 21.4 0.5 CB A:SER142 3.5 21.4 0.5 O A:HOH330 3.8 45.6 1.0 OE1 A:GLU105 3.9 55.8 1.0 HB3 A:SER142 3.9 25.6 0.5 HB2 A:SER142 4.0 25.7 0.5 CD A:GLU138 4.0 79.3 1.0 HE1 A:HIS63 4.0 0.2 1.0 OE2 A:GLU138 4.0 64.2 1.0 OE2 A:GLU60 4.4 56.4 1.0 CD A:GLU105 4.6 44.6 1.0 HB2 A:GLU59 4.6 29.8 1.0 OE2 A:GLU59 4.7 77.0 1.0 HA A:SER142 4.7 24.1 0.5 HA A:SER142 4.7 24.4 0.5 OE2 A:GLU105 4.7 47.5 1.0 HZ1 A:LYS145 4.7 74.3 1.0 CA A:SER142 4.8 20.1 0.5 CA A:SER142 4.8 20.3 0.5 HB3 A:GLU59 4.8 29.8 1.0 CE1 A:HIS63 4.9 83.5 1.0 CD A:GLU59 4.9 68.3 1.0 O A:GLU138 4.9 26.8 1.0 OE1 A:GLU59 4.9 83.5 1.0

Nickel binding site 3 out of 3 in 6kh4

Nickel Binding Sites List in 6kh4

Nickel binding site 3 out of 3 in the Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Design and Crystal Structure of Protein Mofs with Ferritin Nanocages As Linkers and Nickel Clusters As Nodes within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni204 b:0.6 occ:0.26 HE2 A:HIS159 2.0 78.8 0.9 NE2 A:HIS159 2.4 65.6 0.9 HD2 A:HIS159 2.4 66.3 0.9 CD2 A:HIS159 2.6 55.3 0.9 CE1 A:HIS159 3.5 44.7 0.9 CG A:HIS159 3.8 62.5 0.9 HE1 A:HIS159 4.0 53.6 0.9 ND1 A:HIS159 4.2 57.7 0.9 HG2 A:PRO158 4.4 61.9 1.0 HD2 A:PRO158 4.7 56.2 1.0 HB2 A:HIS159 4.8 58.1 0.9 CB A:HIS159 4.9 48.5 0.9

Reference: