Nickel in PDB 6l76: Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution

The structure of Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution, PDB code: 6l76 was solved by M.H.Hou, C.R.Jhan, R.B.Satange, S.M.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.51 / 2.94
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	64.718, 64.718, 246.578, 90, 90, 120
R / Rfree (%)	23.5 / 27.6

The binding sites of Nickel atom in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution (pdb code 6l76). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 7 binding sites of Nickel where determined in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution, PDB code: 6l76:
Jump to Nickel binding site number: 1; 2; 3; 4; 5; 6; 7;

Nickel binding site 1 out of 7 in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni107 b:74.0 occ:1.00 O9 A:CPH103 1.8 101.2 1.0 O1 A:CPH103 2.0 86.0 1.0 O9 B:CPH106 2.0 82.8 1.0 O1 B:CPH106 2.3 112.5 1.0 C9 A:CPH103 2.6 95.7 1.0 C1 A:CPH103 2.9 82.8 1.0 C9 B:CPH106 3.0 76.3 1.0 C1 B:CPH106 3.1 75.1 1.0 C9A A:CPH103 3.2 86.4 1.0 C9A B:CPH106 3.4 74.8 1.0 O8 A:CPH103 3.6 98.0 1.0 C8A A:CPH103 3.9 96.0 1.0 O8 B:CPH106 4.0 72.5 1.0 C8 A:CPH103 4.2 101.2 1.0 C8A B:CPH106 4.3 86.9 1.0 O1 F:CDR1 4.3 92.6 1.0 O2 B:DC16 4.4 78.2 1.0 C2 B:CPH106 4.4 76.7 1.0 C2 A:CPH103 4.4 69.8 1.0 O4' B:DC17 4.4 80.5 1.0 C1 F:CDR1 4.5 77.8 1.0 C4A A:CPH103 4.6 87.6 1.0 C1' B:DC17 4.7 80.9 1.0 C8 B:CPH106 4.7 87.0 1.0 O2 A:DC6 4.7 74.6 1.0 N2 A:DG5 4.8 91.4 1.0 C2' A:DC6 4.8 81.3 1.0 C2 F:CDR1 4.9 91.0 1.0 O1 G:CDR1 4.9 79.6 1.0 C4A B:CPH106 4.9 92.0 1.0 C1 G:CDR1 4.9 72.3 1.0 O4' A:DC7 5.0 78.3 1.0

Nickel binding site 2 out of 7 in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni108 b:105.5 occ:1.00 N7 A:DG5 2.2 103.5 1.0 C8 A:DG5 3.2 86.5 1.0 C5 A:DG5 3.3 89.4 1.0 O A:HOH205 3.4 81.7 1.0 O6 A:DG5 3.5 89.5 1.0 C6 A:DG5 3.7 81.6 1.0 O6 A:DG4 4.2 100.5 1.0 N9 A:DG5 4.4 84.8 1.0 C4 A:DG5 4.4 83.3 1.0 N7 A:DG4 4.5 104.3 1.0 C6 A:DG4 4.7 94.6 1.0 N4 A:DC6 4.9 78.9 1.0 C5 A:DG4 4.9 94.4 1.0

Nickel binding site 3 out of 7 in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni107 b:96.5 occ:1.00 N7 B:DG15 2.2 98.8 1.0 O B:HOH203 2.2 93.8 1.0 C8 B:DG15 3.1 94.0 1.0 C5 B:DG15 3.3 99.8 1.0 O6 B:DG15 3.6 87.9 1.0 C6 B:DG15 3.8 101.3 1.0 N9 B:DG15 4.3 80.0 1.0 C4 B:DG15 4.4 78.8 1.0 N7 B:DG14 4.5 80.4 1.0 N4 B:DC16 4.9 83.3 1.0 O6 B:DG14 4.9 106.5 1.0

Nickel binding site 4 out of 7 in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 4 of Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Ni107 b:96.8 occ:1.00 N7 C:DG5 2.3 97.2 1.0 C8 C:DG5 3.1 96.5 1.0 O C:HOH207 3.2 91.3 1.0 C5 C:DG5 3.4 74.8 1.0 O6 C:DG5 3.8 90.5 1.0 C6 C:DG5 4.0 72.7 1.0 O6 C:DG4 4.1 94.2 1.0 N7 C:DG4 4.3 82.3 1.0 N9 C:DG5 4.4 73.2 1.0 C4 C:DG5 4.5 72.4 1.0 C6 C:DG4 4.6 87.8 1.0 C5 C:DG4 4.7 88.2 1.0

Nickel binding site 5 out of 7 in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 5 of Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni107 b:78.9 occ:1.00 O9 D:CPH103 1.9 83.4 1.0 O9 C:CPH103 1.9 68.0 1.0 O1 D:CPH103 1.9 91.0 1.0 O1 C:CPH103 2.6 98.6 1.0 C9 D:CPH103 2.8 80.6 1.0 C1 D:CPH103 3.0 74.6 1.0 C9 C:CPH103 3.0 83.7 1.0 C9A D:CPH103 3.3 71.8 1.0 C1 C:CPH103 3.4 66.0 1.0 C9A C:CPH103 3.6 66.7 1.0 O8 D:CPH103 3.7 86.2 1.0 O8 C:CPH103 3.7 83.0 1.0 C8A D:CPH103 4.1 79.6 1.0 C8A C:CPH103 4.3 86.5 1.0 O2 C:DC6 4.3 85.2 1.0 C2 D:CPH103 4.4 70.9 1.0 C8 D:CPH103 4.4 81.3 1.0 O4' C:DC7 4.5 80.1 1.0 C8 C:CPH103 4.5 69.7 1.0 O2 D:DC16 4.5 99.0 1.0 C2' D:DC16 4.6 73.0 1.0 N2 D:DG15 4.6 88.4 1.0 C1' D:DC16 4.6 71.5 1.0 C2 C:CPH103 4.7 84.0 1.0 C1 J:CDR1 4.7 78.0 1.0 O1 J:CDR1 4.7 92.7 1.0 C1 L:CDR1 4.8 71.6 1.0 C4A D:CPH103 4.8 70.8 1.0 O1 L:CDR1 4.8 89.6 1.0 O4' D:DC17 4.8 96.8 1.0 C2' C:DC6 5.0 78.6 1.0

Nickel binding site 6 out of 7 in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 6 of Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni108 b:105.9 occ:1.00 N7 D:DG13 2.3 109.5 1.0 O D:HOH201 2.8 74.2 1.0 C8 D:DG13 3.1 95.5 1.0 C5 D:DG13 3.3 107.3 1.0 OP2 D:DG13 3.4 107.0 1.0 O6 D:DG13 3.7 95.7 1.0 C6 D:DG13 3.8 90.9 1.0 N9 D:DG13 4.3 84.4 1.0 C4 D:DG13 4.4 95.3 1.0 P D:DG13 4.4 111.8 1.0 OP1 D:DG13 4.5 104.6 1.0

Nickel binding site 7 out of 7 in the Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 7 of Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni109 b:126.6 occ:1.00 O D:HOH202 2.6 76.6 1.0 O D:HOH201 2.7 74.2 1.0 N7 D:DG14 2.8 104.8 1.0 O6 D:DG14 3.1 110.6 1.0 C5 D:DG14 3.6 100.3 1.0 C6 D:DG14 3.7 106.4 1.0 N7 D:DG13 3.9 109.5 1.0 C8 D:DG14 3.9 96.6 1.0 N7 D:DG15 4.2 87.1 1.0 C5 D:DG13 4.2 107.3 1.0 C8 D:DG13 4.3 95.5 1.0 C6 D:DG13 4.6 90.9 1.0 C8 D:DG15 4.7 84.0 1.0 OP1 D:DG13 4.7 104.6 1.0 C4 D:DG13 4.8 95.3 1.0 O6 D:DG13 4.8 95.7 1.0 N9 D:DG13 4.8 84.4 1.0 C4 D:DG14 4.8 98.9 1.0 O C:HOH202 4.9 71.8 1.0

M.H.Hou, C.R.Jhan, R.B.Satange, S.M.Lin. Crystal Structure of the Ni(II)(Chro)2-D(Ttgggccgaa/Ttcggcccaa) Complex at 2.94 Angstrom Resolution To Be Published.