Nickel in PDB 6lrx: Marsupenaeus Japonicus Ferritin Mutant(T158H)

All present enzymatic activity of Marsupenaeus Japonicus Ferritin Mutant(T158H):
1.16.3.1;

The structure of Marsupenaeus Japonicus Ferritin Mutant(T158H), PDB code: 6lrx was solved by G.Zhao, X.Tan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.62 / 1.70
Space group	P 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	117.186, 117.186, 117.186, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 17.4

The structure of Marsupenaeus Japonicus Ferritin Mutant(T158H) also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Nickel atom in the Marsupenaeus Japonicus Ferritin Mutant(T158H) (pdb code 6lrx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Marsupenaeus Japonicus Ferritin Mutant(T158H), PDB code: 6lrx:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Marsupenaeus Japonicus Ferritin Mutant(T158H)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Marsupenaeus Japonicus Ferritin Mutant(T158H) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni202 b:16.0 occ:0.48 O A:HOH338 2.0 26.1 1.0 O A:HOH306 2.0 31.8 1.0 O A:HOH392 2.1 31.8 1.0 O A:HOH331 2.1 32.0 1.0 OG A:SER141 2.1 17.8 0.7 OE1 A:GLU137 2.1 31.4 1.0 OG A:SER141 3.0 18.5 0.3 CD A:GLU137 3.0 34.4 1.0 CB A:SER141 3.0 17.3 0.3 CB A:SER141 3.0 17.2 0.7 O A:HOH346 3.1 45.0 1.0 OE2 A:GLU137 3.2 29.2 1.0 O A:HOH487 3.4 51.9 1.0 OE2 A:GLU58 3.8 32.9 1.0 OE1 A:GLU104 3.9 28.8 0.9 O A:HOH374 4.0 43.0 1.0 OE2 A:GLU59 4.1 34.9 1.0 OE2 A:GLU104 4.2 28.6 0.9 O A:HOH550 4.2 43.6 1.0 CA A:SER141 4.3 18.0 0.3 CA A:SER141 4.3 18.0 0.7 O A:GLU137 4.3 17.5 1.0 O A:HOH325 4.4 29.0 1.0 CG A:GLU137 4.4 31.2 1.0 CD A:GLU104 4.4 28.7 0.9 CE1 A:HIS62 4.6 32.4 1.0 O A:HOH527 4.8 37.7 1.0 CD A:GLU58 4.9 40.1 1.0 N A:SER141 5.0 15.8 0.7 N A:SER141 5.0 15.9 0.3

Nickel binding site 2 out of 2 in the Marsupenaeus Japonicus Ferritin Mutant(T158H)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Marsupenaeus Japonicus Ferritin Mutant(T158H) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni203 b:55.5 occ:0.25 O A:HOH365 2.1 39.3 1.0 O A:HOH485 2.1 46.2 0.5 O A:HOH514 2.4 46.0 0.5 OE1 A:GLU95 2.5 31.7 1.0 OE2 A:GLU95 3.0 20.7 1.0 CD A:GLU95 3.1 25.9 1.0 O A:HOH547 4.3 33.0 1.0 CG A:GLU95 4.5 17.8 1.0 O A:HOH444 4.7 47.8 1.0 O A:HOH555 5.0 43.3 1.0

X.Tan, H.Chen, C.Gu, J.Zhang, T.Zhang, H.Wang, G.Zhao. Converting Histidine-Induced 3D Protein Arrays in Crystals Into Their 3D Analogues in Solution By Metal Coordination Cross-Linking. Commun Chem 2020.
ISSN: ESSN 2399-3669
DOI: 10.1038/S42004-020-00394-X