Nickel in PDB 6ru9: The 3D Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough at 1.36 Angstrom Resolution

Enzymatic activity of The 3D Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough at 1.36 Angstrom Resolution

Protein crystallography data

Other elements in 6ru9:

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 6ru9

Nickel Binding Sites List in 6ru9

Nickel binding site 1 out of 1 in the The 3D Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough at 1.36 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The 3D Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough at 1.36 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni502 b:17.6 occ:0.80 S B:H2S504 2.0 23.3 0.8 SG B:CYS75 2.3 17.3 1.0 SG B:CYS78 2.3 15.7 1.0 SG B:CYS492 2.4 13.5 1.0 SE B:SEC489 2.4 27.4 0.8 FE B:FCO501 2.5 13.5 1.0 HB2 B:SEC489 3.0 25.3 0.2 HB3 B:CYS75 3.1 18.1 1.0 CB B:CYS75 3.1 15.0 1.0 HB2 B:CYS75 3.1 18.1 1.0 SE B:SEC489 3.2 30.5 0.2 H B:CYS78 3.3 15.9 1.0 HB3 B:CYS78 3.4 17.9 1.0 HB2 B:CYS492 3.4 12.7 1.0 C1 B:FCO501 3.5 10.3 1.0 CB B:SEC489 3.5 21.0 0.2 CB B:CYS78 3.5 14.8 1.0 C2 B:FCO501 3.6 12.8 1.0 CB B:CYS492 3.6 10.5 1.0 HB2 B:SEC489 3.6 23.5 0.8 CB B:SEC489 3.6 19.5 0.8 HB B:VAL77 3.7 16.1 1.0 HB3 B:SEC489 3.8 25.3 0.2 H B:CYS492 3.9 12.3 1.0 HB3 B:SEC489 3.9 23.5 0.8 N B:CYS78 3.9 13.2 1.0 HD2 B:ARG422 4.0 17.5 1.0 HE2 B:HIS82 4.2 16.5 1.0 C3 B:FCO501 4.2 14.5 1.0 HB3 B:CYS492 4.2 12.7 1.0 HB2 B:CYS78 4.3 17.9 1.0 CA B:CYS78 4.3 11.9 1.0 N1 B:FCO501 4.4 12.9 1.0 HH11 B:ARG422 4.4 19.8 1.0 H B:VAL77 4.4 15.5 1.0 N B:CYS492 4.5 10.2 1.0 CA B:CYS75 4.5 10.2 1.0 N2 B:FCO501 4.5 12.9 1.0 CA B:CYS492 4.6 9.6 1.0 HB3 B:ALA491 4.6 15.3 1.0 CB B:VAL77 4.6 13.3 1.0 HA B:CYS492 4.7 11.6 1.0 CD B:ARG422 4.8 14.5 1.0 HG3 B:GLU28 4.8 21.3 1.0 NH1 B:ARG422 4.8 16.4 1.0 HD3 B:ARG422 4.8 17.5 1.0 HD2 B:HIS82 4.8 16.2 1.0 HA B:CYS75 4.9 12.3 1.0 CA B:SEC489 4.9 14.8 0.2 C B:VAL77 4.9 13.5 1.0 NE2 B:HIS82 4.9 13.7 1.0 CA B:SEC489 4.9 13.8 0.8 HG12 B:VAL77 4.9 21.9 1.0 C B:CYS78 5.0 14.1 1.0

Reference: