Nickel in PDB 6tej: Structure of Apo Irtab Devoid Sid in Complex with Sybody SYB_NL5

The structure of Structure of Apo Irtab Devoid Sid in Complex with Sybody SYB_NL5, PDB code: 6tej was solved by I.Gonda, F.M.Arnold, C.A.J.Hutter, M.S.Weber, M.A.Seeger, L.M.Hurlimann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.43 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	103.060, 78.580, 133.570, 90.00, 98.20, 90.00
R / Rfree (%)	26.4 / 29.6

The binding sites of Nickel atom in the Structure of Apo Irtab Devoid Sid in Complex with Sybody SYB_NL5 (pdb code 6tej). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Apo Irtab Devoid Sid in Complex with Sybody SYB_NL5, PDB code: 6tej:

Nickel binding site 1 out of 1 in the Structure of Apo Irtab Devoid Sid in Complex with Sybody SYB_NL5


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Apo Irtab Devoid Sid in Complex with Sybody SYB_NL5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1001 b:89.3 occ:1.00 NE2 A:HIS393 2.1 70.0 1.0 NE2 A:HIS444 2.2 64.8 1.0 NE2 A:HIS439 2.4 83.5 1.0 O A:HOH1125 2.6 78.2 1.0 CE1 A:HIS444 3.0 74.7 1.0 CE1 A:HIS439 3.0 76.6 1.0 CE1 A:HIS393 3.0 83.6 1.0 CD2 A:HIS393 3.1 73.7 1.0 CD2 A:HIS444 3.4 78.2 1.0 CD2 A:HIS439 3.6 75.3 1.0 ND1 A:HIS393 4.1 72.8 1.0 ND1 A:HIS444 4.2 88.3 1.0 CG A:HIS393 4.2 58.1 1.0 ND1 A:HIS439 4.3 66.3 1.0 CG A:HIS444 4.4 76.8 1.0 CG A:HIS439 4.6 81.4 1.0

F.M.Arnold, M.S.Weber, I.Gonda, M.J.F.Gallenito, S.Adanau, P.Egloff, I.Zimmermann, C.A.J.Hutter, L.M.Hurlimann, E.Peters, J.Piel, G.Meloni, O.Medalia, M.A.Seeger. The Abc Exporter Irtab Imports and Reduces Mycobacterial Siderophores Nature 2020.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-020-2136-9