Nickel in PDB 6uts: Crystal Structure of Bacterial Pirin Yhhw in Complex with Nickel(II) From Escherichia Coli

The structure of Crystal Structure of Bacterial Pirin Yhhw in Complex with Nickel(II) From Escherichia Coli, PDB code: 6uts was solved by B.Guo, Y.Zhang, Z.Jia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.39 / 3.09
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	108.870, 108.870, 83.368, 90.00, 90.00, 90.00
R / Rfree (%)	23 / 26.5

The binding sites of Nickel atom in the Crystal Structure of Bacterial Pirin Yhhw in Complex with Nickel(II) From Escherichia Coli (pdb code 6uts). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Bacterial Pirin Yhhw in Complex with Nickel(II) From Escherichia Coli, PDB code: 6uts:

Nickel binding site 1 out of 1 in the Crystal Structure of Bacterial Pirin Yhhw in Complex with Nickel(II) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Bacterial Pirin Yhhw in Complex with Nickel(II) From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni301 b:0.6 occ:1.00 NE2 A:HIS57 2.0 0.4 1.0 NE2 A:HIS101 2.0 1.0 1.0 NE2 A:HIS59 2.2 0.4 1.0 CE1 A:HIS101 2.3 0.3 1.0 CE1 A:HIS57 2.7 0.9 1.0 CE1 A:HIS59 2.9 0.3 1.0 CD2 A:HIS57 3.1 0.1 1.0 CD2 A:HIS59 3.2 0.5 1.0 CD2 A:HIS101 3.3 0.3 1.0 ND1 A:HIS101 3.6 0.3 1.0 ND1 A:HIS57 3.9 0.7 1.0 ND1 A:HIS59 4.0 0.0 1.0 OE1 A:GLU103 4.0 0.7 1.0 CG A:HIS101 4.1 0.1 1.0 CG A:HIS57 4.1 0.8 1.0 CG A:HIS59 4.2 0.1 1.0 CD A:GLU103 4.6 0.5 1.0 NE2 A:GLN116 4.9 0.8 1.0

B.Guo, Y.Zhang, G.Hicks, X.Huang, R.Li, N.Roy, Z.Jia. Structure-Dependent Modulation of Substrate Binding and Biodegradation Activity of Pirin Proteins Toward Plant Flavonols. Acs Chem.Biol. 2019.
ISSN: ESSN 1554-8937
PubMed: 31609578
DOI: 10.1021/ACSCHEMBIO.9B00575