Atomistry » Nickel » PDB 7fbw-7odg » 7fcu
Atomistry »
  Nickel »
    PDB 7fbw-7odg »
      7fcu »

Nickel in PDB 7fcu: X-Ray Structure of D2O-Solvent Lysozyme

Enzymatic activity of X-Ray Structure of D2O-Solvent Lysozyme

All present enzymatic activity of X-Ray Structure of D2O-Solvent Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of D2O-Solvent Lysozyme, PDB code: 7fcu was solved by T.Chatake, I.Tanaka, K.Kusaka, S.Fujiwara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.39 / 1.42
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.14, 79.14, 37.779, 90, 90, 90
R / Rfree (%) 16.3 / 19

Other elements in 7fcu:

The structure of X-Ray Structure of D2O-Solvent Lysozyme also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the X-Ray Structure of D2O-Solvent Lysozyme (pdb code 7fcu). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the X-Ray Structure of D2O-Solvent Lysozyme, PDB code: 7fcu:

Nickel binding site 1 out of 1 in 7fcu

Go back to Nickel Binding Sites List in 7fcu
Nickel binding site 1 out of 1 in the X-Ray Structure of D2O-Solvent Lysozyme


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of X-Ray Structure of D2O-Solvent Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:76.4
occ:1.00
OD2 A:ASP52 2.2 25.5 1.0
O A:DOD312 2.2 26.6 1.0
O A:DOD334 2.5 33.7 1.0
CG A:ASP52 3.3 21.1 1.0
O A:DOD357 3.4 36.3 1.0
O A:DOD330 3.7 25.8 1.0
OD1 A:ASP52 3.8 18.2 1.0
O A:DOD307 3.8 36.5 1.0
O A:DOD302 3.8 33.8 1.0
ND2 A:ASN46 4.4 26.9 1.0
O A:GLN57 4.4 17.5 1.0
CB A:ASP52 4.4 14.9 1.0
OE1 A:GLU35 4.5 17.9 1.0
CB A:GLN57 4.8 14.2 1.0

Reference:

T.Chatake, I.Tanaka, K.Kusaka, S.Fujiwara. Protonation States of Hen Egg-White Lysozyme Observed Using D/H Contrast Neutron Crystallography. Acta Crystallogr D Struct V. 78 770 2022BIOL.
ISSN: ISSN 2059-7983
PubMed: 35647923
DOI: 10.1107/S2059798322004521
Page generated: Thu Oct 10 09:14:38 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy