Nickel in PDB 7jvs: Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide

The structure of Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide, PDB code: 7jvs was solved by H.T.Wright, D.Peterson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.84 / 2.30
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	52.552, 56.824, 130.278, 90, 90, 90
R / Rfree (%)	22.4 / 26.4

The structure of Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Nickel atom in the Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide (pdb code 7jvs). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide, PDB code: 7jvs:

Nickel binding site 1 out of 1 in the Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni202 b:46.1 occ:0.33 ND1 D:HIS68 2.4 52.6 1.0 NE2 D:HIS66 2.7 48.4 1.0 HB2 D:HIS68 3.1 47.2 1.0 CE1 D:HIS68 3.2 57.1 1.0 CG D:HIS68 3.3 42.5 1.0 HE1 D:HIS66 3.3 40.9 1.0 HE1 D:HIS68 3.3 68.5 1.0 HG12 D:ILE18 3.4 49.2 1.0 CE1 D:HIS66 3.4 34.0 1.0 CB D:HIS68 3.7 39.4 1.0 CD2 D:HIS66 3.9 34.5 1.0 HB3 D:HIS68 4.0 47.2 1.0 HG21 D:ILE18 4.0 35.3 1.0 HD2 D:HIS66 4.1 41.4 1.0 HG23 D:ILE18 4.1 35.3 1.0 NE2 D:HIS68 4.3 43.1 1.0 CG1 D:ILE18 4.4 41.0 1.0 CD2 D:HIS68 4.4 55.4 1.0 CG2 D:ILE18 4.5 29.4 1.0 HD11 D:ILE18 4.5 54.4 1.0 HD13 D:ILE18 4.6 54.4 1.0 ND1 D:HIS66 4.7 37.7 1.0 CD1 D:ILE18 4.8 45.3 1.0 HG13 D:ILE18 4.9 49.2 1.0 CG D:HIS66 4.9 43.7 1.0 CA D:HIS68 5.0 41.2 1.0

H.T.Wright, D.Peterson, G.Christie. Crystal Structure of An Essential Ribosomal Processing Protease Prp From S. Aureus in Complex with A Substrate Peptide To Be Published.