Nickel in PDB 7ncy: Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3

The structure of Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3, PDB code: 7ncy was solved by M.Welin, M.Akutsu, M.Hakansson, S.Al-Karadaghi, A.Jasilionis, E.Nordbergkarlsson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.38 / 2.00
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	59.62, 59.62, 167.123, 90, 90, 120
R / Rfree (%)	17.7 / 22

The binding sites of Nickel atom in the Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3 (pdb code 7ncy). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3, PDB code: 7ncy:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni202 b:28.1 occ:1.00 NE2 A:HIS-6 2.1 37.6 1.0 NE2 A:HIS-4 2.2 34.6 1.0 CE1 A:HIS-4 3.0 38.7 1.0 CE1 A:HIS-6 3.0 40.5 1.0 CD2 A:HIS-6 3.2 41.0 1.0 CD2 A:HIS-4 3.3 36.2 1.0 ND1 A:HIS-4 4.2 38.2 1.0 ND1 A:HIS-6 4.2 38.4 1.0 CG A:HIS-6 4.3 39.0 1.0 CG A:HIS-4 4.3 40.6 1.0

Nickel binding site 2 out of 2 in the Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni202 b:70.5 occ:1.00 NE2 B:HIS-4 2.0 46.9 1.0 NE2 B:HIS-6 2.4 60.6 1.0 O B:HOH381 2.5 53.5 1.0 O B:HOH371 2.5 52.9 1.0 CE1 B:HIS-4 3.0 46.5 1.0 CD2 B:HIS-4 3.1 43.5 1.0 CE1 B:HIS-6 3.3 59.6 1.0 CD2 B:HIS-6 3.5 59.1 1.0 ND1 B:HIS-4 4.1 43.0 1.0 O B:HOH360 4.1 34.4 1.0 CG B:HIS-4 4.2 42.6 1.0 ND1 B:HIS-6 4.4 59.9 1.0 CG B:HIS-6 4.6 55.0 1.0

M.Welin, M.Akutsu, M.Hakansson, S.Al-Karadaghi, A.Jasilionis, E.Nordberg Karlsson. Dual Specificity Phosphatase From Sulfolobales Beppu Filamentous Virus 3 To Be Published.