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Nickel in PDB 7odf: Structure of the Mini-Rna-Guided Endonuclease Crispr-CAS_PHI3

Other elements in 7odf:

The structure of Structure of the Mini-Rna-Guided Endonuclease Crispr-CAS_PHI3 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Mini-Rna-Guided Endonuclease Crispr-CAS_PHI3 (pdb code 7odf). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Mini-Rna-Guided Endonuclease Crispr-CAS_PHI3, PDB code: 7odf:

Nickel binding site 1 out of 1 in 7odf

Go back to Nickel Binding Sites List in 7odf
Nickel binding site 1 out of 1 in the Structure of the Mini-Rna-Guided Endonuclease Crispr-CAS_PHI3


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Mini-Rna-Guided Endonuclease Crispr-CAS_PHI3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni801

b:99.2
occ:1.00
OD1 A:ASP413 2.0 77.4 1.0
O3' C:DG2 2.4 95.3 1.0
OD2 A:ASP413 2.5 77.4 1.0
CG A:ASP413 2.5 77.4 1.0
OE2 A:GLU618 3.1 75.2 1.0
C3' C:DG2 3.3 95.3 1.0
OE1 A:GLU618 3.5 75.2 1.0
CD A:GLU618 3.7 75.2 1.0
O A:LEU414 3.7 70.5 1.0
CB A:ASP413 4.0 77.4 1.0
C4' C:DG2 4.1 95.3 1.0
N A:LEU414 4.4 70.5 1.0
CB A:ALA712 4.5 88.5 1.0
C2' C:DG2 4.5 95.3 1.0
C5' C:DG2 4.6 95.3 1.0
C A:LEU414 4.6 70.5 1.0
CA A:ASP413 4.6 77.4 1.0
C A:ASP413 4.8 77.4 1.0

Reference:

A.Carabias Del Rey, A.Fugilsang, P.Temperini, S.Stella, S.Erledsson, G.Montoya. Structure of the Mini-Rna-Guided Endonuclease Crispr-CAS12J3 To Be Published.
Page generated: Sat Aug 21 17:31:21 2021

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