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Nickel in PDB 7odg: Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State

Enzymatic activity of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State

All present enzymatic activity of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State:
1.12.99.6;

Protein crystallography data

The structure of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State, PDB code: 7odg was solved by A.Schmidt, J.Kalms, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.00 / 1.62
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.467, 95.76, 120.633, 90, 90, 90
R / Rfree (%) 16.2 / 18.8

Other elements in 7odg:

The structure of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Magnesium (Mg) 1 atom
Iron (Fe) 14 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State (pdb code 7odg). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State, PDB code: 7odg:

Nickel binding site 1 out of 1 in 7odg

Go back to Nickel Binding Sites List in 7odg
Nickel binding site 1 out of 1 in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its Reduced State within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ni1001

b:15.5
occ:1.00
 NI L:NFU1001 0.0 15.5 1.0
SG L:CYS597 2.2 17.9 1.0
SG L:CYS78 2.3 13.0 1.0
SG L:CYS75 2.3 14.0 1.0
SG L:CYS600 2.5 13.3 1.0
FE L:NFU1001 2.6 13.7 1.0
CB L:CYS75 3.1 14.8 1.0
CB L:CYS597 3.3 17.6 1.0
CB L:CYS78 3.4 13.4 1.0
CB L:CYS600 3.5 13.4 1.0
N L:CYS78 3.8 14.4 1.0
C1 L:NFU1001 3.8 10.6 1.0
C2 L:NFU1001 3.9 10.0 1.0
CA L:CYS78 4.2 14.4 1.0
NH1 L:ARG530 4.2 17.7 1.0
C3 L:NFU1001 4.4 11.2 1.0
CA L:CYS75 4.5 13.5 1.0
CA L:CYS600 4.6 13.8 1.0
CZ L:ARG530 4.6 17.3 1.0
N L:CYS600 4.7 14.1 1.0
CA L:CYS597 4.7 14.9 1.0
CB L:VAL77 4.7 14.5 1.0
CD L:ARG530 4.8 15.4 1.0
N2 L:NFU1001 4.8 17.7 1.0
NE L:ARG530 4.8 16.7 1.0
C L:VAL77 4.9 14.0 1.0
N1 L:NFU1001 4.9 16.0 1.0

Reference:

E.Siebert, A.Schmidt, S.Frielingsdorf, J.Kalms, U.Kuhlmann, O.Lenz, P.Scheerer, I.Zebger, P.Hildebrandt. Resonance Raman Spectroscopic Analysis of the Iron-Sulfur Cluster Redox Chain of the Ralstonia Eutropha Membrane-Bound [Nife]-Hydrogenase J Raman Spectrosc 2021.
ISSN: ISSN 0377-0486
DOI: 10.1002/JRS.6163
Page generated: Thu Oct 10 09:20:27 2024

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