Atomistry » Nickel » PDB 7uur-7z5b » 7uus
Atomistry »
  Nickel »
    PDB 7uur-7z5b »
      7uus »

Nickel in PDB 7uus: The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk

Enzymatic activity of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk

All present enzymatic activity of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk:
1.12.99.6;

Other elements in 7uus:

The structure of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk also contains other interesting chemical elements:

Iron (Fe) 80 atoms
Magnesium (Mg) 8 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk (pdb code 7uus). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 8 binding sites of Nickel where determined in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk, PDB code: 7uus:
Jump to Nickel binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Nickel binding site 1 out of 8 in 7uus

Go back to Nickel Binding Sites List in 7uus
Nickel binding site 1 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni601

b:30.8
occ:1.00
 SG A:CYS62 2.2 7.3 1.0
SG A:CYS510 2.2 11.0 1.0
SG A:CYS513 2.5 9.3 1.0
SG A:CYS65 2.6 7.5 1.0
FE A:FCO602 2.7 11.2 1.0
CB A:CYS62 3.0 7.3 1.0
CB A:CYS510 3.1 11.0 1.0
CB A:CYS513 3.6 9.3 1.0
C1 A:FCO602 3.7 11.2 1.0
CG2 A:ILE64 3.8 7.6 1.0
CB A:CYS65 3.8 7.5 1.0
C2 A:FCO602 3.8 11.2 1.0
N A:CYS65 4.2 7.5 1.0
C3 A:FCO602 4.4 11.2 1.0
N A:CYS513 4.4 9.3 1.0
CD A:ARG443 4.4 10.6 1.0
CA A:CYS62 4.4 7.3 1.0
CA A:CYS513 4.5 9.3 1.0
CG2 A:VAL512 4.5 9.3 1.0
CA A:CYS510 4.5 11.0 1.0
N1 A:FCO602 4.5 11.2 1.0
CA A:CYS65 4.6 7.5 1.0
NH1 A:ARG443 4.6 10.6 1.0
NE A:ARG443 4.7 10.6 1.0
N2 A:FCO602 4.7 11.2 1.0
CZ A:ARG443 4.9 10.6 1.0
C A:CYS62 5.0 7.3 1.0

Nickel binding site 2 out of 8 in 7uus

Go back to Nickel Binding Sites List in 7uus
Nickel binding site 2 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni601

b:31.1
occ:1.00
 SG C:CYS62 2.2 7.3 1.0
SG C:CYS510 2.2 11.0 1.0
SG C:CYS513 2.5 9.3 1.0
SG C:CYS65 2.6 7.5 1.0
FE C:FCO602 2.7 11.2 1.0
CB C:CYS62 3.0 7.3 1.0
CB C:CYS510 3.1 11.0 1.0
CB C:CYS513 3.6 9.3 1.0
C1 C:FCO602 3.7 11.2 1.0
CG2 C:ILE64 3.8 7.6 1.0
CB C:CYS65 3.8 7.5 1.0
C2 C:FCO602 3.8 11.2 1.0
N C:CYS65 4.2 7.5 1.0
C3 C:FCO602 4.4 11.2 1.0
N C:CYS513 4.4 9.3 1.0
CD C:ARG443 4.4 10.6 1.0
CA C:CYS62 4.4 7.3 1.0
CG2 C:VAL512 4.5 9.2 1.0
CA C:CYS513 4.5 9.3 1.0
CA C:CYS510 4.5 11.0 1.0
N1 C:FCO602 4.5 11.2 1.0
CA C:CYS65 4.6 7.5 1.0
NH1 C:ARG443 4.7 10.6 1.0
NE C:ARG443 4.7 10.6 1.0
N2 C:FCO602 4.7 11.2 1.0
CZ C:ARG443 4.9 10.6 1.0
C C:CYS62 5.0 7.3 1.0

Nickel binding site 3 out of 8 in 7uus

Go back to Nickel Binding Sites List in 7uus
Nickel binding site 3 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ni601

b:30.8
occ:1.00
 SG E:CYS62 2.2 7.3 1.0
SG E:CYS510 2.2 11.0 1.0
SG E:CYS513 2.5 9.3 1.0
SG E:CYS65 2.6 7.5 1.0
FE E:FCO602 2.7 11.2 1.0
CB E:CYS62 3.0 7.3 1.0
CB E:CYS510 3.1 11.0 1.0
CB E:CYS513 3.6 9.3 1.0
C1 E:FCO602 3.7 11.2 1.0
CG2 E:ILE64 3.8 7.6 1.0
CB E:CYS65 3.8 7.5 1.0
C2 E:FCO602 3.8 11.2 1.0
N E:CYS65 4.2 7.5 1.0
C3 E:FCO602 4.4 11.2 1.0
N E:CYS513 4.4 9.3 1.0
CD E:ARG443 4.4 10.6 1.0
CA E:CYS62 4.4 7.3 1.0
CA E:CYS513 4.5 9.3 1.0
CG2 E:VAL512 4.5 9.3 1.0
CA E:CYS510 4.5 11.0 1.0
N1 E:FCO602 4.5 11.2 1.0
CA E:CYS65 4.6 7.5 1.0
NH1 E:ARG443 4.6 10.6 1.0
NE E:ARG443 4.7 10.6 1.0
N2 E:FCO602 4.7 11.2 1.0
CZ E:ARG443 4.9 10.6 1.0
C E:CYS62 5.0 7.3 1.0

Nickel binding site 4 out of 8 in 7uus

Go back to Nickel Binding Sites List in 7uus
Nickel binding site 4 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 4 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ni601

b:31.1
occ:1.00
 SG G:CYS62 2.2 7.3 1.0
SG G:CYS510 2.2 11.0 1.0
SG G:CYS513 2.5 9.3 1.0
SG G:CYS65 2.6 7.5 1.0
FE G:FCO602 2.7 11.2 1.0
CB G:CYS62 3.0 7.3 1.0
CB G:CYS510 3.1 11.0 1.0
CB G:CYS513 3.6 9.3 1.0
C1 G:FCO602 3.7 11.2 1.0
CG2 G:ILE64 3.8 7.6 1.0
CB G:CYS65 3.8 7.5 1.0
C2 G:FCO602 3.8 11.2 1.0
N G:CYS65 4.2 7.5 1.0
C3 G:FCO602 4.4 11.2 1.0
N G:CYS513 4.4 9.3 1.0
CD G:ARG443 4.4 10.6 1.0
CA G:CYS62 4.4 7.3 1.0
CA G:CYS513 4.5 9.3 1.0
CG2 G:VAL512 4.5 9.2 1.0
CA G:CYS510 4.5 11.0 1.0
N1 G:FCO602 4.5 11.2 1.0
CA G:CYS65 4.6 7.5 1.0
NH1 G:ARG443 4.7 10.6 1.0
NE G:ARG443 4.7 10.6 1.0
N2 G:FCO602 4.7 11.2 1.0
CZ G:ARG443 4.9 10.6 1.0
C G:CYS62 5.0 7.3 1.0

Nickel binding site 5 out of 8 in 7uus

Go back to Nickel Binding Sites List in 7uus
Nickel binding site 5 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 5 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Ni601

b:30.8
occ:1.00
 SG I:CYS510 2.2 11.0 1.0
SG I:CYS62 2.2 7.3 1.0
SG I:CYS513 2.5 9.3 1.0
SG I:CYS65 2.6 7.5 1.0
FE I:FCO602 2.7 11.2 1.0
CB I:CYS62 3.0 7.3 1.0
CB I:CYS510 3.1 11.0 1.0
CB I:CYS513 3.6 9.3 1.0
C1 I:FCO602 3.7 11.2 1.0
CG2 I:ILE64 3.8 7.6 1.0
CB I:CYS65 3.8 7.5 1.0
C2 I:FCO602 3.8 11.2 1.0
N I:CYS65 4.2 7.5 1.0
C3 I:FCO602 4.4 11.2 1.0
N I:CYS513 4.4 9.3 1.0
CD I:ARG443 4.4 10.6 1.0
CA I:CYS62 4.4 7.3 1.0
CA I:CYS513 4.5 9.3 1.0
CG2 I:VAL512 4.5 9.3 1.0
CA I:CYS510 4.5 11.0 1.0
N1 I:FCO602 4.5 11.2 1.0
CA I:CYS65 4.6 7.5 1.0
NH1 I:ARG443 4.6 10.6 1.0
NE I:ARG443 4.7 10.6 1.0
N2 I:FCO602 4.7 11.2 1.0
CZ I:ARG443 4.9 10.6 1.0
C I:CYS62 5.0 7.3 1.0

Nickel binding site 6 out of 8 in 7uus

Go back to Nickel Binding Sites List in 7uus
Nickel binding site 6 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 6 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Ni601

b:30.8
occ:1.00
 SG K:CYS62 2.2 7.3 1.0
SG K:CYS510 2.2 11.0 1.0
SG K:CYS513 2.5 9.3 1.0
SG K:CYS65 2.6 7.5 1.0
FE K:FCO602 2.7 11.2 1.0
CB K:CYS62 3.0 7.3 1.0
CB K:CYS510 3.1 11.0 1.0
CB K:CYS513 3.6 9.3 1.0
C1 K:FCO602 3.7 11.2 1.0
CG2 K:ILE64 3.8 7.6 1.0
CB K:CYS65 3.8 7.5 1.0
C2 K:FCO602 3.8 11.2 1.0
N K:CYS65 4.2 7.5 1.0
C3 K:FCO602 4.4 11.2 1.0
N K:CYS513 4.4 9.3 1.0
CD K:ARG443 4.4 10.6 1.0
CA K:CYS62 4.4 7.3 1.0
CA K:CYS513 4.5 9.3 1.0
CG2 K:VAL512 4.5 9.3 1.0
CA K:CYS510 4.5 11.0 1.0
N1 K:FCO602 4.5 11.2 1.0
CA K:CYS65 4.6 7.5 1.0
NH1 K:ARG443 4.6 10.6 1.0
NE K:ARG443 4.7 10.6 1.0
N2 K:FCO602 4.7 11.2 1.0
CZ K:ARG443 4.9 10.6 1.0
C K:CYS62 5.0 7.3 1.0

Nickel binding site 7 out of 8 in 7uus

Go back to Nickel Binding Sites List in 7uus
Nickel binding site 7 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 7 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Ni601

b:31.1
occ:1.00
 SG M:CYS62 2.2 7.3 1.0
SG M:CYS510 2.2 11.0 1.0
SG M:CYS513 2.5 9.3 1.0
SG M:CYS65 2.6 7.5 1.0
FE M:FCO602 2.7 11.2 1.0
CB M:CYS62 3.0 7.3 1.0
CB M:CYS510 3.1 11.0 1.0
CB M:CYS513 3.6 9.3 1.0
C1 M:FCO602 3.7 11.2 1.0
CG2 M:ILE64 3.8 7.6 1.0
CB M:CYS65 3.8 7.5 1.0
C2 M:FCO602 3.8 11.2 1.0
N M:CYS65 4.2 7.5 1.0
C3 M:FCO602 4.4 11.2 1.0
N M:CYS513 4.4 9.3 1.0
CD M:ARG443 4.4 10.6 1.0
CA M:CYS62 4.4 7.3 1.0
CG2 M:VAL512 4.5 9.2 1.0
CA M:CYS513 4.5 9.3 1.0
CA M:CYS510 4.5 11.0 1.0
N1 M:FCO602 4.5 11.2 1.0
CA M:CYS65 4.6 7.5 1.0
NH1 M:ARG443 4.7 10.6 1.0
NE M:ARG443 4.7 10.6 1.0
N2 M:FCO602 4.7 11.2 1.0
CZ M:ARG443 4.9 10.6 1.0
C M:CYS62 5.0 7.3 1.0

Nickel binding site 8 out of 8 in 7uus

Go back to Nickel Binding Sites List in 7uus
Nickel binding site 8 out of 8 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 8 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Ni601

b:31.1
occ:1.00
 SG O:CYS62 2.2 7.3 1.0
SG O:CYS510 2.2 11.0 1.0
SG O:CYS513 2.5 9.3 1.0
SG O:CYS65 2.6 7.5 1.0
FE O:FCO602 2.7 11.2 1.0
CB O:CYS62 3.0 7.3 1.0
CB O:CYS510 3.1 11.0 1.0
CB O:CYS513 3.6 9.3 1.0
C1 O:FCO602 3.7 11.2 1.0
CG2 O:ILE64 3.8 7.6 1.0
CB O:CYS65 3.8 7.5 1.0
C2 O:FCO602 3.8 11.2 1.0
N O:CYS65 4.2 7.5 1.0
C3 O:FCO602 4.4 11.2 1.0
N O:CYS513 4.4 9.3 1.0
CD O:ARG443 4.4 10.6 1.0
CA O:CYS62 4.4 7.3 1.0
CG2 O:VAL512 4.5 9.2 1.0
CA O:CYS513 4.5 9.3 1.0
CA O:CYS510 4.5 11.0 1.0
N1 O:FCO602 4.5 11.2 1.0
CA O:CYS65 4.6 7.5 1.0
NH1 O:ARG443 4.7 10.6 1.0
NE O:ARG443 4.7 10.6 1.0
N2 O:FCO602 4.7 11.2 1.0
CZ O:ARG443 4.9 10.6 1.0
C O:CYS62 5.0 7.3 1.0

Reference:

R.Grinter, A.Kropp, H.Venugopal, M.Senger, J.Badley, P.Cabotaje, S.T.Stripp, C.K.Barlow, M.Belousoff, G.M.Cook, R.B.Schittenhelm, S.Khalid, G.Berggren, G.Greening. An Oxygen-Insensitive, Quinone-Transporting Hydrogenase Enables Bacteria to Extract Energy From Air To Be Published.
Page generated: Thu Oct 10 09:27:44 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy