Nickel in PDB 7vei: Neutron Structure of D2O-Solvent Lysozyme

All present enzymatic activity of Neutron Structure of D2O-Solvent Lysozyme:
3.2.1.17;

The structure of Neutron Structure of D2O-Solvent Lysozyme also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Nickel atom in the Neutron Structure of D2O-Solvent Lysozyme (pdb code 7vei). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Neutron Structure of D2O-Solvent Lysozyme, PDB code: 7vei:

Nickel binding site 1 out of 1 in the Neutron Structure of D2O-Solvent Lysozyme


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Neutron Structure of D2O-Solvent Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni201 b:82.1 occ:1.00 OD2 A:ASP52 2.2 26.5 1.0 O A:DOD317 2.4 26.3 1.0 O A:DOD338 2.6 29.7 1.0 D1 A:DOD365 2.7 44.4 1.0 D1 A:DOD338 3.1 35.7 1.0 CG A:ASP52 3.3 18.4 1.0 O A:DOD365 3.5 37.0 1.0 D1 A:DOD327 3.7 31.3 1.0 OD1 A:ASP52 3.7 17.1 1.0 O A:DOD322 3.8 34.2 1.0 O A:DOD327 3.8 26.1 1.0 O A:DOD304 4.0 42.3 1.0 OD1 A:ASN46 4.1 30.2 1.0 HB3 A:GLN57 4.2 15.1 1.0 DD21 A:ASN46 4.3 29.6 1.0 CB A:ASP52 4.5 14.0 1.0 HB3 A:ASP52 4.5 16.8 1.0 D2 A:DOD327 4.6 31.3 1.0 O A:GLN57 4.6 14.9 1.0 HG23 A:VAL109 4.6 51.7 1.0 HB2 A:ASP52 4.6 16.8 1.0 OE1 A:GLU35 4.7 16.2 1.0 DD21 A:ASN59 4.7 49.2 1.0 CG A:ASN46 4.9 20.6 1.0 ND2 A:ASN46 4.9 24.6 1.0 HB2 A:ASN59 5.0 22.6 1.0 HB A:VAL109 5.0 29.9 1.0

T.Chatake, I.Tanaka, K.Kusaka, S.Fujiwara. Protonation States of Hen Egg-White Lysozyme Observed Using D/H Contrast Neutron Crystallography. Acta Crystallogr D Struct V. 78 770 2022BIOL.
ISSN: ISSN 2059-7983
PubMed: 35647923
DOI: 10.1107/S2059798322004521