Nickel in PDB 7vtb: Partially Closed Conformation of Talaropentaene Synthase Cyclase Domain

The structure of Partially Closed Conformation of Talaropentaene Synthase Cyclase Domain, PDB code: 7vtb was solved by T.Hui, T.Mori, I.Abe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.20 / 2.00
Space group	I 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	75.809, 61.942, 81.297, 90, 116.3, 90
R / Rfree (%)	18.1 / 22.4

The binding sites of Nickel atom in the Partially Closed Conformation of Talaropentaene Synthase Cyclase Domain (pdb code 7vtb). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Partially Closed Conformation of Talaropentaene Synthase Cyclase Domain, PDB code: 7vtb:

Nickel binding site 1 out of 1 in the Partially Closed Conformation of Talaropentaene Synthase Cyclase Domain


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Partially Closed Conformation of Talaropentaene Synthase Cyclase Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni401 b:26.1 occ:1.00 OD2 A:ASP279 3.0 26.8 1.0 O A:HOH588 3.1 33.2 1.0 O A:ARG278 3.7 21.5 1.0 CA A:ASP279 3.9 21.1 1.0 C A:ARG278 4.0 21.9 1.0 CB A:ASP282 4.0 24.5 1.0 N A:ASP279 4.0 21.9 1.0 CG A:ASP279 4.1 29.5 1.0 NZ A:LYS275 4.3 37.5 1.0 CB A:ARG278 4.4 25.4 1.0 CG A:ASP282 4.5 34.1 1.0 OD1 A:ASP282 4.5 34.0 1.0 CB A:ASP279 4.6 21.5 1.0 CA A:ARG278 4.9 24.4 1.0 C A:ASP279 5.0 21.1 1.0

H.Tao, L.Lauterbach, G.Bian, R.Chen, A.Hou, T.Mori, S.Cheng, B.Hu, L.Lu, X.Mu, M.Li, N.Adachi, M.Kawasaki, T.Moriya, T.Senda, X.Wang, Z.Deng, I.Abe, J.S.Dickschat, T.Liu. Discovery of Non-Squalene Triterpenes. Nature V. 606 414 2022.
ISSN: ESSN 1476-4687
PubMed: 35650436
DOI: 10.1038/S41586-022-04773-3