Nickel in PDB 7vud: Carotenoid Cleavage Dioxygenase 1 From Osmanthus Fragrans

The structure of Carotenoid Cleavage Dioxygenase 1 From Osmanthus Fragrans, PDB code: 7vud was solved by D.Sharma, B.Xue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.48 / 2.80
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	209.941, 209.941, 209.941, 90, 90, 90
R / Rfree (%)	22.7 / 25.8

The binding sites of Nickel atom in the Carotenoid Cleavage Dioxygenase 1 From Osmanthus Fragrans (pdb code 7vud). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Carotenoid Cleavage Dioxygenase 1 From Osmanthus Fragrans, PDB code: 7vud:

Nickel binding site 1 out of 1 in the Carotenoid Cleavage Dioxygenase 1 From Osmanthus Fragrans


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Carotenoid Cleavage Dioxygenase 1 From Osmanthus Fragrans within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni604 b:53.9 occ:1.00 HE2 A:HIS337 1.2 48.8 0.0 HE2 A:HIS271 1.2 52.7 0.0 HE2 A:HIS223 1.2 43.9 0.0 HE2 A:HIS527 1.5 52.5 0.0 NE2 A:HIS337 2.0 50.3 1.0 NE2 A:HIS271 2.0 51.4 1.0 O A:HOH701 2.1 44.3 1.0 NE2 A:HIS223 2.1 46.2 1.0 NE2 A:HIS527 2.1 56.6 1.0 CE1 A:HIS527 2.9 54.6 1.0 CE1 A:HIS337 2.9 51.5 1.0 CE1 A:HIS271 3.0 52.1 1.0 CE1 A:HIS223 3.0 46.5 1.0 HE1 A:HIS527 3.1 54.9 1.0 CD2 A:HIS337 3.1 51.0 1.0 HE1 A:HIS271 3.1 52.2 1.0 HE1 A:HIS337 3.1 51.1 1.0 CD2 A:HIS271 3.1 51.4 1.0 CD2 A:HIS527 3.1 57.3 1.0 HE1 A:HIS223 3.1 46.5 1.0 CD2 A:HIS223 3.2 47.1 1.0 HD2 A:HIS337 3.3 50.8 1.0 HD2 A:HIS271 3.3 51.5 1.0 HD2 A:HIS527 3.4 56.5 1.0 HD2 A:HIS223 3.4 46.6 1.0 ND1 A:HIS527 4.0 53.8 1.0 ND1 A:HIS337 4.1 50.8 1.0 ND1 A:HIS271 4.1 52.3 1.0 CG A:HIS527 4.1 55.3 1.0 ND1 A:HIS223 4.2 46.7 1.0 CG A:HIS337 4.2 50.8 1.0 CG A:HIS271 4.2 51.4 1.0 HG1 A:THR175 4.2 56.6 0.0 O15 A:OXN601 4.3 70.8 1.0 CG A:HIS223 4.3 45.8 1.0 OG1 A:THR175 4.5 57.0 1.0 HB3 A:ALA222 4.6 45.4 1.0 HE1 A:PHE402 4.7 69.0 1.0 HB3 A:PHE336 4.7 52.9 1.0 HD1 A:HIS527 4.7 52.9 0.0 C12 A:OXN601 4.8 70.3 1.0 HD1 A:HIS271 4.8 56.2 0.0 HD1 A:HIS337 4.9 48.7 0.0 H11 A:OXN601 4.9 70.0 1.0 HB2 A:ALA176 4.9 48.4 1.0 HD1 A:HIS223 4.9 47.0 0.0 HB1 A:ALA222 4.9 45.4 1.0

D.Sharma, B.Xue. Carotenoid Cleavage Dioxygenase 1 From Osmanthus Fragrans To Be Published.