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Nickel in PDB 7y2w: Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K

Enzymatic activity of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K

All present enzymatic activity of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K:
4.2.1.1;

Protein crystallography data

The structure of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K, PDB code: 7y2w was solved by C.U.Kim, J.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.16 / 1.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.511, 41.248, 71.936, 90, 104.07, 90
R / Rfree (%) 12.8 / 15.6

Nickel Binding Sites:

The binding sites of Nickel atom in the Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K (pdb code 7y2w). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K, PDB code: 7y2w:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 7y2w

Go back to Nickel Binding Sites List in 7y2w
Nickel binding site 1 out of 2 in the Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni301

b:7.3
occ:1.00
ND1 A:HIS119 2.0 7.0 1.0
O1 A:MNP303 2.1 11.4 0.5
O1 A:MNP303 2.1 9.2 0.5
NE2 A:HIS94 2.1 7.9 1.0
NE2 A:HIS96 2.1 7.1 1.0
O A:HOH436 2.1 9.6 1.0
O A:HOH481 2.2 10.3 1.0
CE1 A:HIS119 2.9 7.7 1.0
C1 A:MNP303 3.0 13.7 0.5
C1 A:MNP303 3.0 12.8 0.5
CE1 A:HIS94 3.0 7.3 1.0
CE1 A:HIS96 3.0 7.1 1.0
CD2 A:HIS96 3.1 6.8 1.0
CD2 A:HIS94 3.1 7.7 1.0
CG A:HIS119 3.2 6.9 1.0
O2 A:MNP303 3.3 12.9 0.5
O2 A:MNP303 3.5 17.9 0.5
CB A:HIS119 3.7 6.5 1.0
OE1 A:GLU106 4.0 10.1 1.0
O A:HOH494 4.0 15.8 1.0
NE2 A:HIS119 4.1 7.8 1.0
ND1 A:HIS94 4.2 7.8 1.0
ND1 A:HIS96 4.2 7.7 1.0
OG1 A:THR199 4.2 9.7 1.0
CG A:HIS94 4.2 7.4 1.0
CG A:HIS96 4.3 7.6 1.0
CD2 A:HIS119 4.3 6.8 1.0
C2 A:MNP303 4.3 16.3 0.5
C2 A:MNP303 4.3 15.7 0.5
O A:HOH517 4.7 20.4 1.0
CH2 A:TRP209 4.7 9.8 1.0
C6' A:MNP303 4.8 20.3 0.5
C2' A:MNP303 4.9 22.2 0.5
CD A:GLU106 5.0 9.1 1.0

Nickel binding site 2 out of 2 in 7y2w

Go back to Nickel Binding Sites List in 7y2w
Nickel binding site 2 out of 2 in the Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Ni-Carbonic Anhydrase II Complexed with 3NPA After Uv at 180 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni302

b:43.2
occ:1.00
N A:HIS4 2.3 59.1 1.0
CA A:HIS4 2.5 33.5 1.0
ND1 A:HIS4 2.7 24.7 1.0
N A:TRP5 3.4 19.5 1.0
CE1 A:HIS4 3.5 49.5 1.0
C A:HIS4 3.5 41.8 1.0
CG A:HIS4 3.6 43.0 1.0
CB A:HIS4 3.6 42.9 1.0
CD1 A:TRP5 4.2 19.2 1.0
NE2 A:HIS4 4.6 69.5 1.0
O A:HIS4 4.6 62.6 1.0
CD2 A:HIS4 4.6 65.0 1.0
CA A:TRP5 4.7 16.7 1.0
CG A:TRP5 4.9 15.8 1.0
CB A:TRP5 5.0 15.7 1.0

Reference:

C.U.Kim, J.K.Kim. Temperature Series of Human Carbonic Anhydrase II with Photolysis of Caged CO2 To Be Published.
Page generated: Thu Dec 28 11:56:11 2023

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