Nickel in PDB 7y8x: Crystal Structure of Albef Homolog From Quasibacillus Thermotolerans in Complex with Ni(II)

The structure of Crystal Structure of Albef Homolog From Quasibacillus Thermotolerans in Complex with Ni(II), PDB code: 7y8x was solved by K.Ishida, A.Nakamura, S.Kojima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.71 / 2.25
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	136.382, 136.382, 118.44, 90, 90, 120
R / Rfree (%)	20 / 23.3

The binding sites of Nickel atom in the Crystal Structure of Albef Homolog From Quasibacillus Thermotolerans in Complex with Ni(II) (pdb code 7y8x). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Albef Homolog From Quasibacillus Thermotolerans in Complex with Ni(II), PDB code: 7y8x:

Nickel binding site 1 out of 1 in the Crystal Structure of Albef Homolog From Quasibacillus Thermotolerans in Complex with Ni(II)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Albef Homolog From Quasibacillus Thermotolerans in Complex with Ni(II) within 5.0Å range: probe atom residue distance (Å) B Occ F:Ni407 b:123.8 occ:1.00 O3 F:PO4401 2.1 80.5 1.0 O1 F:PO4401 2.3 79.6 1.0 NE2 F:HIS54 2.4 53.5 1.0 P F:PO4401 2.5 82.6 1.0 NE2 F:HIS58 2.5 57.6 1.0 OE2 F:GLU130 2.6 88.5 1.0 OE1 F:GLU130 3.0 69.5 1.0 O2 F:PO4401 3.0 62.9 1.0 CE1 F:HIS54 3.1 57.6 1.0 CD F:GLU130 3.1 67.0 1.0 CE1 F:HIS58 3.4 55.8 1.0 CD2 F:HIS54 3.5 45.1 1.0 CD2 F:HIS58 3.6 48.2 1.0 O4 F:PO4401 3.9 98.0 1.0 ND1 F:HIS54 4.3 41.5 1.0 CG F:HIS54 4.5 61.1 1.0 OE2 F:GLU57 4.5 56.0 1.0 ND1 F:HIS58 4.6 50.7 1.0 CD2 F:LEU153 4.6 73.6 1.0 CG F:GLU130 4.6 67.6 1.0 CG F:HIS58 4.7 49.6 1.0 O F:HOH503 4.8 51.0 1.0 O1 F:EDO414 4.9 74.8 1.0

K.Ishida, A.Nakamura, S.Kojima. Crystal Structure of the Albef Complex Involved in Subtilosin A Biosynthesis. Structure 2022.
ISSN: ISSN 0969-2126