Nickel in PDB 7z0s: Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)

The structure of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) also contains other interesting chemical elements:

Iron

(Fe)

30 atoms

The binding sites of Nickel atom in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) (pdb code 7z0s). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H), PDB code: 7z0s:

Nickel binding site 1 out of 1 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ E:Ni601 b:44.7 occ:1.00 SG E:CYS531 2.2 31.7 1.0 SG E:CYS241 2.2 29.0 1.0 SG E:CYS244 2.2 30.7 1.0 SG E:CYS534 2.3 30.9 1.0 FE E:FCO602 2.5 31.6 1.0 CB E:CYS241 2.8 29.0 1.0 CB E:CYS531 3.2 31.7 1.0 CB E:CYS244 3.4 30.7 1.0 C1 E:FCO602 3.4 31.6 1.0 CB E:CYS534 3.5 30.9 1.0 C2 E:FCO602 3.6 31.6 1.0 N E:CYS244 3.8 30.7 1.0 CA E:CYS244 4.2 30.7 1.0 C3 E:FCO602 4.3 31.6 1.0 N1 E:FCO602 4.3 31.6 1.0 CA E:CYS241 4.3 29.0 1.0 CA E:CYS534 4.4 30.9 1.0 ND2 G:ASN49 4.5 29.9 1.0 N2 E:FCO602 4.5 31.6 1.0 CB E:ILE243 4.6 30.7 1.0 CA E:CYS531 4.6 31.7 1.0 N E:CYS534 4.6 30.9 1.0 NE2 E:HIS248 4.6 27.9 1.0 C E:ILE243 4.6 30.7 1.0 C E:CYS241 4.8 29.0 1.0 CG2 E:ILE243 4.8 30.7 1.0 NH1 E:ARG478 4.8 31.5 1.0 C E:CYS244 4.8 30.7 1.0 O E:CYS241 4.9 29.0 1.0 N E:ILE243 4.9 30.7 1.0 CA E:ILE243 4.9 30.7 1.0 O E:CYS531 4.9 31.7 1.0 OG E:SER533 5.0 30.0 1.0 CD2 E:HIS248 5.0 27.9 1.0

R.Steinhilper, G.Hoff, J.Heider, B.J.Murphy. Structure of the Membrane-Bound Formate Hydrogenlyase Complex From Escherichia Coli. Nat Commun V. 13 5395 2022.
ISSN: ESSN 2041-1723
PubMed: 36104349
DOI: 10.1038/S41467-022-32831-X