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Nickel in PDB 7z5b: Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546

Enzymatic activity of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546

All present enzymatic activity of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546:
4.2.99.18;

Protein crystallography data

The structure of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546, PDB code: 7z5b was solved by E.Scaletti, P.Stenmark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 82.96 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.454, 80.632, 165.925, 90, 90, 90
R / Rfree (%) 25.9 / 30.3

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546 (pdb code 7z5b). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546, PDB code: 7z5b:

Nickel binding site 1 out of 1 in 7z5b

Go back to Nickel Binding Sites List in 7z5b
Nickel binding site 1 out of 1 in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni402

b:62.9
occ:1.00
 NE2 B:HIS276 2.4 55.4 1.0
NE2 C:HIS276 2.5 64.8 1.0
NE2 A:HIS276 2.6 64.2 1.0
NE2 B:HIS282 2.8 61.3 1.0
NE2 C:HIS282 2.8 64.5 1.0
NE2 A:HIS282 2.8 69.4 1.0
CE1 A:HIS276 3.2 64.3 1.0
CD2 B:HIS276 3.3 55.8 1.0
CE1 C:HIS276 3.3 64.2 1.0
CE1 B:HIS276 3.4 55.6 1.0
CD2 C:HIS276 3.4 64.6 1.0
CD2 A:HIS276 3.6 64.2 1.0
CE1 A:HIS282 3.6 70.1 1.0
CE1 C:HIS282 3.7 64.5 1.0
CE1 B:HIS282 3.7 61.8 1.0
CD2 B:HIS282 3.7 61.3 1.0
CD2 C:HIS282 3.7 64.6 1.0
CD2 A:HIS282 3.7 70.4 1.0
ND1 A:HIS276 4.3 64.2 1.0
ND1 C:HIS276 4.3 64.6 1.0
CG B:HIS276 4.4 56.0 1.0
ND1 B:HIS276 4.4 55.9 1.0
CG C:HIS276 4.4 64.0 1.0
CG A:HIS276 4.5 63.4 1.0
ND1 A:HIS282 4.7 70.7 1.0
ND1 C:HIS282 4.8 65.0 1.0
ND1 B:HIS282 4.8 62.9 1.0
CG A:HIS282 4.8 70.8 1.0
CG C:HIS282 4.8 65.1 1.0
CG B:HIS282 4.8 61.9 1.0

Reference:

E.Scaletti, P.Stenmark. Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH013546 To Be Published.
Page generated: Tue Apr 11 17:51:20 2023

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