Nickel in PDB 7z5r: Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035

Enzymatic activity of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035

All present enzymatic activity of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035:
4.2.99.18;

Protein crystallography data

The structure of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035, PDB code: 7z5r was solved by J.R.Davies, E.Scaletti, P.Stenmark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 85.07 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.459, 81.533, 170.145, 90, 90, 90
R / Rfree (%) 23.7 / 29.4

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035 (pdb code 7z5r). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035, PDB code: 7z5r:

Nickel binding site 1 out of 1 in 7z5r

Go back to Nickel Binding Sites List in 7z5r
Nickel binding site 1 out of 1 in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni402

b:51.4
occ:1.00
 NE2 C:HIS276 2.2 45.8 1.0
NE2 B:HIS282 2.3 40.9 1.0
NE2 A:HIS276 2.3 48.4 1.0
NE2 B:HIS276 2.3 48.8 1.0
NE2 C:HIS282 2.4 47.9 1.0
NE2 A:HIS282 2.4 48.6 1.0
CE1 B:HIS282 3.1 40.8 1.0
CE1 C:HIS276 3.2 48.1 1.0
CE1 A:HIS276 3.2 49.5 1.0
CD2 C:HIS276 3.2 45.7 1.0
CD2 A:HIS276 3.3 50.2 1.0
CE1 B:HIS276 3.3 46.0 1.0
CD2 C:HIS282 3.3 48.2 1.0
CD2 B:HIS276 3.3 46.1 1.0
CE1 A:HIS282 3.4 47.8 1.0
CD2 B:HIS282 3.4 43.4 1.0
CD2 A:HIS282 3.4 48.1 1.0
CE1 C:HIS282 3.4 48.3 1.0
ND1 B:HIS282 4.3 42.8 1.0
ND1 C:HIS276 4.3 45.4 1.0
ND1 A:HIS276 4.4 50.8 1.0
CG C:HIS276 4.4 45.4 1.0
CG A:HIS276 4.4 50.9 1.0
ND1 B:HIS276 4.4 45.7 1.0
CG B:HIS282 4.4 43.2 1.0
CG B:HIS276 4.4 46.9 1.0
CG C:HIS282 4.5 45.7 1.0
ND1 C:HIS282 4.5 47.3 1.0
ND1 A:HIS282 4.5 47.2 1.0
CG A:HIS282 4.5 46.5 1.0

Reference:

J.R.Davies, E.Scaletti, P.Stenmark. Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH012035 To Be Published.
Page generated: Tue Apr 11 17:51:20 2023

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