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Nickel in PDB 7zg3: Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228

Enzymatic activity of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228

All present enzymatic activity of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228:
4.2.99.18;

Protein crystallography data

The structure of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228, PDB code: 7zg3 was solved by J.R.Davies, E.Scaletti, P.Stenmark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 84.95 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.79, 81.318, 169.905, 90, 90, 90
R / Rfree (%) 27.6 / 30.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228 (pdb code 7zg3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228, PDB code: 7zg3:

Nickel binding site 1 out of 1 in 7zg3

Go back to Nickel Binding Sites List in 7zg3
Nickel binding site 1 out of 1 in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni402

b:47.1
occ:1.00
 NE2 A:HIS276 2.5 50.1 1.0
NE2 B:HIS276 2.6 48.5 1.0
CE1 C:HIS276 2.7 48.4 1.0
NE2 B:HIS282 2.8 52.8 1.0
NE2 C:HIS282 2.9 48.6 1.0
NE2 A:HIS282 3.0 55.2 1.0
NE2 C:HIS276 3.1 47.8 1.0
CE1 A:HIS276 3.2 50.1 1.0
CE1 B:HIS276 3.3 48.5 1.0
CD2 A:HIS276 3.4 50.5 1.0
CD2 B:HIS276 3.5 48.5 1.0
CE1 B:HIS282 3.6 52.6 1.0
CE1 C:HIS282 3.7 48.6 1.0
ND1 C:HIS276 3.8 48.9 1.0
CE1 A:HIS282 3.8 55.1 1.0
CD2 B:HIS282 3.8 52.9 1.0
CD2 C:HIS282 3.9 49.0 1.0
CD2 A:HIS282 3.9 55.7 1.0
ND1 A:HIS276 4.2 50.2 1.0
CD2 C:HIS276 4.3 48.4 1.0
ND1 B:HIS276 4.3 47.8 1.0
CG A:HIS276 4.4 50.4 1.0
CG B:HIS276 4.4 47.6 1.0
CG C:HIS276 4.6 48.8 1.0
ND1 B:HIS282 4.7 53.1 1.0
CG B:HIS282 4.9 52.5 1.0
ND1 C:HIS282 4.9 49.3 1.0
ND1 A:HIS282 4.9 55.9 1.0
CG C:HIS282 5.0 49.0 1.0
CG A:HIS282 5.0 55.5 1.0

Reference:

J.R.Davies, E.Scaletti, P.Stenmark. Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH011228 To Be Published.
Page generated: Thu Dec 28 11:56:30 2023

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