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Nickel in PDB 8avd: Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement)

Nickel Binding Sites:

The binding sites of Nickel atom in the Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement) (pdb code 8avd). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 3 binding sites of Nickel where determined in the Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement), PDB code: 8avd:
Jump to Nickel binding site number: 1; 2; 3;

Nickel binding site 1 out of 3 in 8avd

Go back to Nickel Binding Sites List in 8avd
Nickel binding site 1 out of 3 in the Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni901

b:179.7
occ:1.00
NH2 B:ARG467 3.5 179.7 1.0
NE B:ARG467 3.6 179.7 1.0
CZ B:ARG467 3.7 179.7 1.0
CD B:ARG467 4.5 179.7 1.0
NH1 B:ARG467 4.5 179.7 1.0
NE2 B:HIS478 4.6 179.7 1.0
CG B:ARG467 4.9 179.7 1.0

Nickel binding site 2 out of 3 in 8avd

Go back to Nickel Binding Sites List in 8avd
Nickel binding site 2 out of 3 in the Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ni901

b:83.5
occ:1.00
NH2 D:ARG467 3.4 190.7 1.0
NE D:ARG467 3.5 190.7 1.0
CZ D:ARG467 3.5 190.7 1.0
CD D:ARG467 4.3 190.7 1.0
NH1 D:ARG467 4.3 190.7 1.0
CG D:ARG467 4.7 190.7 1.0
NE2 D:HIS478 4.8 189.5 1.0

Nickel binding site 3 out of 3 in 8avd

Go back to Nickel Binding Sites List in 8avd
Nickel binding site 3 out of 3 in the Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Cryo-Em Structure For A 3:3 Complex Between Mouse Leptin and the Mouse Lep-R Ectodomain (Local Refinement) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ni901

b:179.7
occ:1.00
CE1 F:HIS478 4.3 179.7 1.0
NH2 F:ARG467 4.3 179.7 1.0
NE F:ARG467 4.4 179.7 1.0
CZ F:ARG467 4.6 179.7 1.0

Reference:

A.Tsirigotaki, A.Dansercoer, K.H.G.Verschueren, I.Markovic, C.Pollmann, M.Hafer, J.Felix, C.Birck, W.Van Putte, D.Catteeuw, J.Tavernier, J.Fernando Bazan, J.Piehler, S.N.Savvides, K.Verstraete. Mechanism of Receptor Assembly Via the Pleiotropic Adipokine Leptin. Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
PubMed: 36959263
DOI: 10.1038/S41594-023-00941-9
Page generated: Thu Oct 10 09:35:43 2024

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