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Nickel in PDB 8bvx: Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264

Enzymatic activity of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264

All present enzymatic activity of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264:
4.2.99.18;

Protein crystallography data

The structure of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264, PDB code: 8bvx was solved by E.Scaletti, P.Stenmark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.85 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.589, 81.874, 169.954, 90, 90, 90
R / Rfree (%) 26.3 / 30.2

Other elements in 8bvx:

The structure of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264 also contains other interesting chemical elements:

Iodine (I) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264 (pdb code 8bvx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264, PDB code: 8bvx:

Nickel binding site 1 out of 1 in 8bvx

Go back to Nickel Binding Sites List in 8bvx
Nickel binding site 1 out of 1 in the Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni404

b:52.8
occ:1.00
 NE2 B:HIS276 2.1 49.8 1.0
NE2 A:HIS276 2.2 51.8 1.0
NE2 A:HIS282 2.2 47.5 1.0
NE2 B:HIS282 2.3 54.7 1.0
NE2 C:HIS282 2.3 54.4 1.0
NE2 C:HIS276 2.3 56.7 1.0
CE1 B:HIS276 3.0 50.5 1.0
CE1 A:HIS276 3.1 51.5 1.0
CD2 B:HIS276 3.2 51.2 1.0
CE1 C:HIS276 3.2 56.2 1.0
CD2 B:HIS282 3.2 54.5 1.0
CE1 A:HIS282 3.2 46.8 1.0
CE1 C:HIS282 3.2 54.6 1.0
CD2 A:HIS282 3.2 47.1 1.0
CD2 A:HIS276 3.2 51.7 1.0
CD2 C:HIS282 3.3 55.6 1.0
CE1 B:HIS282 3.3 54.2 1.0
CD2 C:HIS276 3.3 55.6 1.0
ND1 B:HIS276 4.2 49.4 1.0
ND1 A:HIS276 4.2 51.5 1.0
CG B:HIS276 4.3 50.7 1.0
ND1 A:HIS282 4.3 47.6 1.0
ND1 C:HIS276 4.3 56.0 1.0
ND1 C:HIS282 4.3 53.5 1.0
CG A:HIS276 4.3 52.0 1.0
CG B:HIS282 4.3 54.1 1.0
CG A:HIS282 4.4 47.9 1.0
ND1 B:HIS282 4.4 54.0 1.0
CG C:HIS282 4.4 55.7 1.0
CG C:HIS276 4.4 55.5 1.0

Reference:

E.Scaletti, P.Stenmark. Structure of the Mouse 8-Oxoguanine Dna Glycosylase MOGG1 in Complex with Ligand TH13264 To Be Published.
Page generated: Thu Oct 10 09:37:13 2024

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