Nickel in PDB 8oyf: Crystal Structure of Asbtnm in Lipidic Cubic Phase Without Substrate Bound

The structure of Crystal Structure of Asbtnm in Lipidic Cubic Phase Without Substrate Bound, PDB code: 8oyf was solved by P.Becker, A.D.Cameron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.96 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.479, 80.609, 86.453, 90, 90, 90
R / Rfree (%)	21.1 / 23.9

The structure of Crystal Structure of Asbtnm in Lipidic Cubic Phase Without Substrate Bound also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Nickel atom in the Crystal Structure of Asbtnm in Lipidic Cubic Phase Without Substrate Bound (pdb code 8oyf). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Asbtnm in Lipidic Cubic Phase Without Substrate Bound, PDB code: 8oyf:

Nickel binding site 1 out of 1 in the Crystal Structure of Asbtnm in Lipidic Cubic Phase Without Substrate Bound


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Asbtnm in Lipidic Cubic Phase Without Substrate Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1007 b:65.0 occ:1.00 ND1 A:HIS312 2.0 52.8 1.0 O A:HOH1133 2.2 61.1 1.0 O A:HOH1134 2.3 62.5 1.0 HB3 A:HIS312 2.6 67.2 1.0 CG A:HIS312 2.9 56.9 1.0 CE1 A:HIS312 3.0 53.6 1.0 CB A:HIS312 3.2 56.0 1.0 HE1 A:HIS312 3.3 63.9 1.0 HB2 A:HIS312 3.5 67.2 1.0 CD2 A:HIS312 4.0 52.8 1.0 NE2 A:HIS312 4.1 53.6 1.0 CA A:HIS312 4.5 49.9 1.0 HA A:HIS312 4.5 60.0 1.0 HE2 A:HIS312 4.9 64.4 1.0 HD2 A:HIS312 4.9 63.4 1.0

P.Becker, F.B.Naughton, D.H.Brotherton, R.Pacheco-Gomez, O.Beckstein, A.D.Cameron. Mechanism of Substrate Binding and Transport in Bass Transporters. To Be Published.