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Nickel in PDB 8qou: Reactive Intermediate Deaminase A Mutant - R107K

Enzymatic activity of Reactive Intermediate Deaminase A Mutant - R107K

All present enzymatic activity of Reactive Intermediate Deaminase A Mutant - R107K:
3.5.99.10;

Protein crystallography data

The structure of Reactive Intermediate Deaminase A Mutant - R107K, PDB code: 8qou was solved by G.Rizzi, C.Visentin, F.Di Pisa, S.Ricagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.50 / 1.40
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 90.482, 90.482, 90.482, 90, 90, 90
R / Rfree (%) 14.9 / 17

Nickel Binding Sites:

The binding sites of Nickel atom in the Reactive Intermediate Deaminase A Mutant - R107K (pdb code 8qou). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Reactive Intermediate Deaminase A Mutant - R107K, PDB code: 8qou:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 8qou

Go back to Nickel Binding Sites List in 8qou
Nickel binding site 1 out of 2 in the Reactive Intermediate Deaminase A Mutant - R107K


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Reactive Intermediate Deaminase A Mutant - R107K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni203

b:14.0
occ:1.00
N A:SER-1 1.9 14.0 1.0
N A:HIS0 2.0 13.7 1.0
ND1 A:HIS0 2.0 13.8 1.0
N A:GLY-2 2.0 14.4 1.0
C A:SER-1 2.8 15.2 1.0
C A:GLY-2 2.8 14.8 1.0
CA A:SER-1 2.9 14.8 1.0
CA A:GLY-2 2.9 15.1 1.0
CE1 A:HIS0 3.0 13.2 1.0
CG A:HIS0 3.0 13.0 1.0
CA A:HIS0 3.1 13.0 1.0
CB A:HIS0 3.3 13.7 1.0
N A:MET1 3.7 12.6 1.0
OG A:SER-1 3.7 19.3 1.0
C A:HIS0 3.8 14.2 1.0
CB A:SER-1 3.8 15.7 1.0
O A:SER-1 4.0 15.6 1.0
O A:GLY-2 4.0 15.9 1.0
NE2 A:HIS0 4.1 14.2 1.0
CD2 A:HIS0 4.1 13.8 1.0
O A:HOH408 4.3 16.9 1.0
CA A:MET1 4.9 11.8 1.0
O A:HIS0 5.0 16.0 1.0
CB A:MET1 5.0 15.5 1.0

Nickel binding site 2 out of 2 in 8qou

Go back to Nickel Binding Sites List in 8qou
Nickel binding site 2 out of 2 in the Reactive Intermediate Deaminase A Mutant - R107K


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Reactive Intermediate Deaminase A Mutant - R107K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni401

b:14.5
occ:1.00
N B:SER-1 1.9 16.6 1.0
ND1 B:HIS0 1.9 15.3 1.0
N B:HIS0 2.0 12.2 1.0
N B:GLY-2 2.0 19.6 1.0
C B:GLY-2 2.8 19.7 1.0
C B:SER-1 2.8 13.8 1.0
CA B:SER-1 2.9 16.2 1.0
CA B:GLY-2 2.9 19.4 1.0
CG B:HIS0 2.9 14.4 1.0
CE1 B:HIS0 3.0 15.4 1.0
CA B:HIS0 3.0 11.9 1.0
CB B:HIS0 3.2 12.9 1.0
N B:MET1 3.6 9.8 1.0
C B:HIS0 3.7 9.8 1.0
OG B:SER-1 3.8 19.8 1.0
CB B:SER-1 3.9 16.8 1.0
O B:GLY-2 4.0 22.4 1.0
O B:SER-1 4.0 14.8 1.0
CD2 B:HIS0 4.0 15.2 1.0
NE2 B:HIS0 4.1 16.4 1.0
O B:HOH605 4.4 21.6 1.0
CA B:MET1 4.8 9.8 1.0
O B:HIS0 4.8 9.8 1.0
O B:MET1 5.0 9.6 1.0

Reference:

G.Rizzi, C.Visentin, F.Di Pisa, S.Ricagno. Reactive Intermediate Deaminase A Mutant - R107K To Be Published.
Page generated: Thu Oct 10 09:47:19 2024

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