Nickel in PDB 8spm: Crystal Structure of Nika in Complex Ni-Ama

The structure of Crystal Structure of Nika in Complex Ni-Ama, PDB code: 8spm was solved by D.Sychantha, G.Prehna, G.D.Wright, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.15 / 2.15
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	66.42, 66.42, 267.77, 90, 90, 90
R / Rfree (%)	18.9 / 24.2

The binding sites of Nickel atom in the Crystal Structure of Nika in Complex Ni-Ama (pdb code 8spm). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Nika in Complex Ni-Ama, PDB code: 8spm:

Nickel binding site 1 out of 1 in the Crystal Structure of Nika in Complex Ni-Ama


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Nika in Complex Ni-Ama within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni602 b:48.0 occ:1.00 N A:II1601 2.0 49.3 1.0 N2 A:II1601 2.0 47.2 1.0 O1 A:II1601 2.0 48.8 1.0 N1 A:II1601 2.0 48.4 1.0 O3 A:II1601 2.0 49.2 1.0 NE2 A:HIS416 2.0 53.2 1.0 C7 A:II1601 2.7 51.5 1.0 C4 A:II1601 2.8 47.8 1.0 C2 A:II1601 2.8 49.7 1.0 C3 A:II1601 2.8 47.5 1.0 C1 A:II1601 2.8 51.1 1.0 CE1 A:HIS416 2.9 47.4 1.0 C6 A:II1601 2.9 50.1 1.0 C A:II1601 3.0 53.0 1.0 CD2 A:HIS416 3.1 49.4 1.0 C5 A:II1601 3.3 51.1 1.0 O2 A:II1601 4.1 50.5 1.0 ND1 A:HIS416 4.1 48.1 1.0 C9 A:II1601 4.1 58.1 1.0 O A:II1601 4.2 53.4 1.0 CG A:HIS416 4.2 52.5 1.0 C8 A:II1601 4.3 52.8 1.0 O6 A:II1601 4.4 51.2 1.0 CZ2 A:TRP398 4.6 50.0 1.0 NH2 A:ARG137 4.6 48.4 1.0 O4 A:II1601 4.7 53.1 1.0 CE2 A:TRP398 4.9 45.8 1.0 O7 A:II1601 5.0 60.1 1.0

D.Sychantha, K.Koteva, G.Prehna, G.D.Wright. Targeting Bacterial Nickel Transport Inhibits Virulence-Associated Ni-Dependent Enzymes To Be Published.