Nickel in PDB 8u00: Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides

The structure of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides, PDB code: 8u00 was solved by Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Biologyof Infectious Diseases (Csbid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.10 / 1.85
Space group	P 42
Cell size a, b, c (Å), α, β, γ (°)	85.341, 85.341, 78.844, 90, 90, 90
R / Rfree (%)	18.9 / 22.5

The structure of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides also contains other interesting chemical elements:

Zinc	(Zn)	6 atoms
Chlorine	(Cl)	4 atoms
Magnesium	(Mg)	2 atoms

The binding sites of Nickel atom in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides (pdb code 8u00). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides, PDB code: 8u00:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni309 b:55.3 occ:1.00 OD2 A:ASP269 2.3 52.5 1.0 OD1 A:ASP269 2.6 47.0 1.0 O A:HOH424 2.6 51.7 1.0 CG A:ASP269 2.8 50.7 1.0 NE A:ARG226 4.0 55.0 1.0 O A:HOH435 4.2 58.0 1.0 CB A:ASP269 4.2 46.6 1.0 NH2 A:ARG226 4.6 49.2 1.0 CZ A:ARG226 4.7 49.8 1.0 O A:ALA265 4.7 51.6 1.0 CD A:ARG226 4.7 52.0 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni308 b:53.7 occ:1.00 O B:HOH434 1.9 50.9 1.0 OD2 B:ASP269 2.3 52.1 1.0 OD1 B:ASP269 2.6 44.6 1.0 O B:HOH436 2.7 50.6 1.0 CG B:ASP269 2.8 49.1 1.0 NE B:ARG226 4.0 54.4 1.0 CB B:ASP269 4.3 46.0 1.0 NH2 B:ARG226 4.7 49.4 1.0 O B:ALA265 4.7 49.1 1.0 CD B:ARG226 4.7 52.4 1.0 CZ B:ARG226 4.7 51.3 1.0 O B:HOH454 4.9 56.8 1.0

Y.Kim, N.Maltseva, M.Endres, A.Joachimiak. Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides To Be Published.