Nickel in PDB 8vcu: Crystal Structure of the Oligomeric Rmcl-1 in Complex with Lactulose

The structure of Crystal Structure of the Oligomeric Rmcl-1 in Complex with Lactulose, PDB code: 8vcu was solved by A.Hernandez-Santoyo, J.Loera-Rubalcava, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.60 / 1.77
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	39.818, 64.626, 69.376, 94.28, 103.9, 107.94
R / Rfree (%)	18.5 / 22.9

The binding sites of Nickel atom in the Crystal Structure of the Oligomeric Rmcl-1 in Complex with Lactulose (pdb code 8vcu). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Oligomeric Rmcl-1 in Complex with Lactulose, PDB code: 8vcu:

Nickel binding site 1 out of 1 in the Crystal Structure of the Oligomeric Rmcl-1 in Complex with Lactulose


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Oligomeric Rmcl-1 in Complex with Lactulose within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni202 b:41.4 occ:1.00 O D:HOH435 3.1 14.3 1.0 NH1 D:ARG50 3.2 7.5 1.0 CD D:ARG50 3.8 9.2 1.0 CD1 C:PHE95 4.0 14.6 1.0 CZ D:ARG50 4.2 8.0 1.0 CZ2 D:TRP51 4.3 10.6 1.0 CH2 D:TRP51 4.4 9.4 1.0 CE1 C:PHE95 4.4 10.3 1.0 C1 V:GAL2 4.4 22.1 1.0 CD1 D:ILE100 4.4 10.7 1.0 NE D:ARG50 4.5 11.2 1.0 C5 V:GAL2 4.6 24.1 1.0 CG2 D:ILE100 4.6 5.5 1.0 O5 V:GAL2 4.7 22.5 1.0 O D:HOH429 4.7 20.5 1.0 C6 V:FRU1 4.7 18.6 1.0 O C:HOH353 4.9 30.2 1.0 C4 V:FRU1 5.0 29.2 1.0

J.Loera-Rubalcava, E.Garcia-Maldonado, P.Cano-Sanchez, A.Rodriguez-Romero, A.Quintero-Martinez, M.L.Macias-Rubalcava, G.Espinosa-Perez, A.Hernandez-Santoyo. Insights Into A Mytilectin From Mytilus Californianus: Study of Its Unique Galactoside Interactions, Oligomerization Patterns, and Antifungal Activity To Be Published.