Nickel in PDB 1eje: Crystal Structure of An Fmn-Binding Protein

The structure of Crystal Structure of An Fmn-Binding Protein, PDB code: 1eje was solved by D.Christendat, V.Saridakis, A.Bochkarev, C.Arrowsmith, A.M.Edwards, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.93 / 2.20
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	94.650, 94.650, 45.400, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 27.9

The binding sites of Nickel atom in the Crystal Structure of An Fmn-Binding Protein (pdb code 1eje). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of An Fmn-Binding Protein, PDB code: 1eje:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of An Fmn-Binding Protein


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of An Fmn-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni201 b:34.5 occ:1.00 O3P A:FMN401 2.0 30.5 1.0 OD1 A:ASN42 2.1 24.8 1.0 ND1 A:HIS68 2.1 36.2 1.0 O A:HOH1009 2.2 28.6 1.0 O A:HOH1008 2.3 31.6 1.0 OE1 A:GLU105 2.7 32.9 1.0 CG A:ASN42 3.0 26.9 1.0 CE1 A:HIS68 3.1 35.4 1.0 CG A:HIS68 3.2 32.4 1.0 ND2 A:ASN42 3.3 22.2 1.0 CB A:HIS68 3.5 26.7 1.0 P A:FMN401 3.5 32.1 1.0 CD A:GLU105 3.5 33.0 1.0 OE2 A:GLU105 3.5 28.8 1.0 O A:HOH1041 3.7 44.5 1.0 O1P A:FMN401 3.9 28.1 1.0 O A:ILE99 4.0 40.7 1.0 O A:HOH1005 4.1 40.0 1.0 NE2 A:HIS68 4.2 39.9 1.0 O5' A:FMN401 4.2 31.9 1.0 CD2 A:HIS68 4.3 33.2 1.0 CB A:ASN42 4.4 22.7 1.0 O2P A:FMN401 4.5 25.5 1.0 O A:HOH1065 4.7 53.6 1.0 O A:GLU103 4.8 37.6 1.0 O A:PRO100 4.8 42.1 1.0 CA A:HIS68 4.9 26.4 1.0 CG A:GLU105 4.9 33.3 1.0 C A:ILE99 4.9 42.2 1.0 CA A:ASN42 5.0 23.6 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of An Fmn-Binding Protein


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of An Fmn-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni202 b:27.8 occ:1.00 ND1 A:HIS77 2.0 17.8 1.0 O A:HOH1030 2.3 35.7 1.0 CE1 A:HIS77 2.9 19.6 1.0 CG A:HIS77 3.1 19.7 1.0 CB A:HIS77 3.5 23.3 1.0 NE2 A:HIS77 4.1 20.7 1.0 CD2 A:HIS77 4.2 17.9 1.0 O A:THR76 4.8 23.6 1.0 CA A:HIS77 4.9 21.9 1.0

D.Christendat, A.Yee, A.Dharamsi, Y.Kluger, A.Savchenko, J.R.Cort, V.Booth, C.D.Mackereth, V.Saridakis, I.Ekiel, G.Kozlov, K.L.Maxwell, N.Wu, L.P.Mcintosh, K.Gehring, M.A.Kennedy, A.R.Davidson, E.F.Pai, M.Gerstein, A.M.Edwards, C.H.Arrowsmith. Structural Proteomics of An Archaeon. Nat.Struct.Biol. V. 7 903 2000.
ISSN: ISSN 1072-8368
PubMed: 11017201
DOI: 10.1038/82823