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Nickel in PDB 1vjr: Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution

Enzymatic activity of Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution

All present enzymatic activity of Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution:
3.1.3.41;

Protein crystallography data

The structure of Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution, PDB code: 1vjr was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.17 / 2.40
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 93.998, 93.998, 160.365, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 19.4

Other elements in 1vjr:

The structure of Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution (pdb code 1vjr). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution, PDB code: 1vjr:

Nickel binding site 1 out of 1 in 1vjr

Go back to Nickel Binding Sites List in 1vjr
Nickel binding site 1 out of 1 in the Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of 4-Nitrophenylphosphatase (TM1742) From Thermotoga Maritima at 2.40 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni260

b:47.6
occ:1.00
 NE2 A:HIS0 2.2 45.4 1.0
CL A:CL261 2.2 49.3 1.0
CL A:CL262 2.6 69.3 1.0
CD2 A:HIS0 3.1 31.6 1.0
CE1 A:HIS0 3.2 41.0 1.0
ND1 A:HIS0 4.2 51.3 1.0
CG A:HIS0 4.2 50.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Aug 18 18:01:26 2025

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