Atomistry » Nickel » PDB 1t6u-1xmk » 1xi3
Atomistry »
  Nickel »
    PDB 1t6u-1xmk »
      1xi3 »

Nickel in PDB 1xi3: Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001

Enzymatic activity of Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001

All present enzymatic activity of Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001:
2.5.1.3;

Protein crystallography data

The structure of Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001, PDB code: 1xi3 was solved by W.Zhou, L.Chen, W.Tempel, Z.-J.Liu, J.Habel, D.Lee, D.Lin, S.-H.Chang, B.D.Dillard, J.C.Eneh, R.C.Hopkins, F.E.Jenney Jr., L.-L.C.Kelley, H.-S.Lee, T.Li, F.L.Poole Ii, C.Shah, F.J.Sugar, W.B.Arendall Iii, J.S.Richardson, D.C.Richardson, J.P.Rose, M.W.W.Adams, B.-C.Wang, Southeast Collaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.09 / 1.70
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 72.386, 81.210, 152.903, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 21.5

Nickel Binding Sites:

The binding sites of Nickel atom in the Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001 (pdb code 1xi3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001, PDB code: 1xi3:

Nickel binding site 1 out of 1 in 1xi3

Go back to Nickel Binding Sites List in 1xi3
Nickel binding site 1 out of 1 in the Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu- 1255191-001 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni302

b:9.4
occ:0.50
OE1 B:GLU26 2.4 15.8 1.0
OE1 B:GLU29 2.4 20.1 1.0
OE2 B:GLU26 2.4 13.8 1.0
OE2 B:GLU29 2.6 20.4 1.0
CD B:GLU26 2.7 15.1 1.0
CD B:GLU29 2.9 14.1 1.0
CG B:GLU26 4.2 12.9 1.0
CG B:GLU29 4.4 15.6 1.0
NE B:ARG25 4.5 18.7 1.0
O B:HOH459 4.7 21.2 1.0
O B:HOH426 4.8 13.9 1.0
CD B:ARG192 4.8 15.2 1.0
NH2 B:ARG25 4.8 22.7 1.0
NH1 B:ARG192 4.9 16.4 1.0
CB B:GLU26 5.0 12.2 1.0
CA B:GLU26 5.0 10.7 1.0

Reference:

W.Zhou, L.Chen, W.Tempel, Z.-J.Liu, J.Habel, D.Lee, D.Lin, S.-H.Chang, B.D.Dillard, J.C.Eneh, R.C.Hopkins, F.E.Jenney Jr., L.-L.C.Kelley, H.-S.Lee, T.Li, F.L.Poole Ii, C.Shah, F.J.Sugar, W.B.Arendall Iii, J.S.Richardson, D.C.Richardson, J.P.Rose, M.W.W.Adams, B.-C.Wang, Southeast Collaboratory For Structural Genomics. Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu-1255191-001 To Be Published.
Page generated: Wed Oct 9 16:31:44 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy