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Nickel in PDB 2q4s: Ensemble Refinement of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056

Enzymatic activity of Ensemble Refinement of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056

All present enzymatic activity of Ensemble Refinement of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056:
1.13.11.20;

Protein crystallography data

The structure of Ensemble Refinement of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056, PDB code: 2q4s was solved by E.J.Levin, D.A.Kondrashov, G.E.Wesenberg, G.N.Phillips Jr., Center Foreukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.86 / 1.75
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.550, 57.550, 122.076, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 21.1

Nickel Binding Sites:

The binding sites of Nickel atom in the Ensemble Refinement of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056 (pdb code 2q4s). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Ensemble Refinement of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056, PDB code: 2q4s:

Nickel binding site 1 out of 1 in 2q4s

Go back to Nickel Binding Sites List in 2q4s
Nickel binding site 1 out of 1 in the Ensemble Refinement of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Ensemble Refinement of the Protein Crystal Structure of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:15.0
occ:0.06
 NE2 A:HIS86 2.0 11.4 0.1
NE2 A:HIS88 2.1 8.4 0.1
NE2 A:HIS140 2.2 10.3 0.1
O A:HOH359 2.2 22.5 0.1
O A:HOH360 2.3 24.2 0.1
O A:HOH361 2.3 19.2 0.1
CD2 A:HIS86 3.0 11.9 0.1
CE1 A:HIS88 3.0 12.1 0.1
CE1 A:HIS86 3.0 9.4 0.1
CE1 A:HIS140 3.1 11.3 0.1
CD2 A:HIS88 3.1 11.9 0.1
CD2 A:HIS140 3.2 10.7 0.1
OH A:TYR157 4.0 11.6 0.1
ND1 A:HIS86 4.1 9.8 0.1
CG A:HIS86 4.1 10.9 0.1
O A:HOH412 4.1 45.1 0.1
ND1 A:HIS88 4.1 11.3 0.1
ND1 A:HIS140 4.2 9.5 0.1
CG A:HIS88 4.2 11.1 0.1
CG A:HIS140 4.3 11.4 0.1
O A:HOH277 4.3 17.0 0.1
SG A:CYS93 4.3 16.5 0.1
CG2 A:VAL142 4.4 11.0 0.1

Reference:

E.J.Levin, D.A.Kondrashov, G.E.Wesenberg, G.N.Phillips. Ensemble Refinement of Protein Crystal Structures: Validation and Application. Structure V. 15 1040 2007.
ISSN: ISSN 0969-2126
PubMed: 17850744
DOI: 10.1016/J.STR.2007.06.019
Page generated: Wed Oct 9 16:55:29 2024

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