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Nickel in PDB 2rj2: Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution

Enzymatic activity of Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution

All present enzymatic activity of Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution:
6.3.2.19;

Protein crystallography data

The structure of Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution, PDB code: 2rj2 was solved by S.Vaijayanthimala, D.Velmurugan, T.Mizushima, T.Yamane, Y.Yoshida, K.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.91 / 1.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 61.760, 61.760, 115.000, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 21.5

Other elements in 2rj2:

The structure of Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution (pdb code 2rj2). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution, PDB code: 2rj2:

Nickel binding site 1 out of 1 in 2rj2

Go back to Nickel Binding Sites List in 2rj2
Nickel binding site 1 out of 1 in the Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni501

b:19.7
occ:1.00
 N A:SER114 1.9 17.2 1.0
ND1 A:HIS115 2.0 17.1 1.0
N A:HIS115 2.0 15.7 1.0
N A:GLY113 2.1 16.2 1.0
C A:SER114 2.8 16.3 1.0
CA A:SER114 2.8 17.2 1.0
C A:GLY113 2.8 17.1 1.0
CE1 A:HIS115 2.9 15.6 1.0
CA A:GLY113 3.0 16.8 1.0
CG A:HIS115 3.0 15.7 1.0
CA A:HIS115 3.0 15.5 1.0
CB A:HIS115 3.3 15.6 1.0
CB A:TYR118 3.4 14.6 1.0
O A:HIS115 3.6 14.7 1.0
C A:HIS115 3.8 15.3 1.0
OG A:SER114 3.8 19.5 1.0
CB A:SER114 3.8 17.2 1.0
CG A:TYR118 3.9 15.0 1.0
O A:SER114 3.9 21.1 1.0
O A:GLY113 4.0 17.5 1.0
CD2 A:TYR118 4.0 16.2 1.0
NE2 A:HIS115 4.0 14.8 1.0
CD2 A:HIS115 4.1 16.8 1.0
O A:HOH579 4.3 36.8 1.0
O A:HOH647 4.6 40.8 1.0
O A:HOH700 4.6 31.6 1.0
CA A:TYR118 4.7 14.3 1.0
CD1 A:TYR118 4.8 15.6 1.0
N A:TYR118 4.8 14.7 1.0

Reference:

S.Vaijayanthimala, D.Velmurugan, T.Mizushima, T.Yamane, Y.Yoshida, K.Tanaka. Crystal Structure of the Sugar Recognizing Scf Ubiquitin Ligase at 1.7 Resolution To Be Published.
Page generated: Wed Oct 9 16:57:28 2024

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