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Nickel in PDB 3myr: Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
Enzymatic activity of Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
All present enzymatic activity of Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State:
1.12.99.6;
1.12.99.6;
Protein crystallography data
The structure of Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State, PDB code: 3myr
was solved by
H.Ogata,
P.Kellers,
W.Lubitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.00 / 2.10 |
| Space group | P 21 21 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 205.750, 216.960, 119.800, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 13.8 / 16.8 |
Other elements in 3myr:
The structure of Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State also contains other interesting chemical elements:
| Magnesium | (Mg) | 4 atoms |
| Iron | (Fe) | 52 atoms |
| Chlorine | (Cl) | 4 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
(pdb code 3myr). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 4 binding sites of Nickel where determined in the Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State, PDB code: 3myr:
Jump to Nickel binding site number: 1; 2; 3; 4;
In total 4 binding sites of Nickel where determined in the Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State, PDB code: 3myr:
Jump to Nickel binding site number: 1; 2; 3; 4;
Nickel binding site 1 out of 4 in 3myr
Go back to
Nickel Binding Sites List in 3myr
Nickel binding site 1 out
of 4 in the Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State within 5.0Å range:
|
Nickel binding site 2 out of 4 in 3myr
Go back to
Nickel Binding Sites List in 3myr
Nickel binding site 2 out
of 4 in the Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State within 5.0Å range:
|
Nickel binding site 3 out of 4 in 3myr
Go back to
Nickel Binding Sites List in 3myr
Nickel binding site 3 out
of 4 in the Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State within 5.0Å range:
|
Nickel binding site 4 out of 4 in 3myr
Go back to
Nickel Binding Sites List in 3myr
Nickel binding site 4 out
of 4 in the Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 4 of Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State within 5.0Å range:
|
Reference:
H.Ogata,
P.Kellers,
W.Lubitz.
The Crystal Structure of the [Nife] Hydrogenase From the Photosynthetic Bacterium Allochromatium Vinosum: Characterization of the Oxidized Enzyme (Ni-A State). J.Mol.Biol. V. 402 428 2010.
ISSN: ISSN 0022-2836
PubMed: 20673834
DOI: 10.1016/J.JMB.2010.07.041
Page generated: Wed Oct 9 17:32:46 2024
ISSN: ISSN 0022-2836
PubMed: 20673834
DOI: 10.1016/J.JMB.2010.07.041
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