Nickel in PDB 3piv: Zebrafish Interferon 1

The structure of Zebrafish Interferon 1, PDB code: 3piv was solved by O.J.Hamming, R.Hartmann, G.Lutfalla, J.-P.Levraud, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.82 / 2.09
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.834, 62.247, 51.306, 90.00, 91.42, 90.00
R / Rfree (%)	18.3 / 23.5

The binding sites of Nickel atom in the Zebrafish Interferon 1 (pdb code 3piv). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Zebrafish Interferon 1, PDB code: 3piv:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Zebrafish Interferon 1


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Zebrafish Interferon 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni165 b:30.0 occ:1.00 CD2 A:HIS61 2.9 15.1 1.0 ND1 A:HIS64 3.0 22.1 1.0 O A:HOH168 3.4 16.0 1.0 NE2 A:HIS61 3.5 16.8 1.0 CB A:HIS64 3.8 15.0 1.0 CG A:HIS64 3.8 18.1 1.0 CG A:HIS61 3.9 15.2 1.0 CE1 A:HIS64 4.1 22.4 1.0 CA A:HIS61 4.1 10.6 1.0 CB A:HIS61 4.5 13.8 1.0 O A:ASP60 4.7 11.9 1.0 O A:HOH172 4.7 19.7 1.0 CE1 A:HIS61 4.7 17.0 1.0 N A:HIS61 4.8 12.2 1.0 O A:HIS61 4.9 13.3 1.0 ND1 A:HIS61 4.9 16.0 1.0 C A:ASP60 5.0 12.2 1.0

Nickel binding site 2 out of 2 in the Zebrafish Interferon 1


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Zebrafish Interferon 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni165 b:30.0 occ:1.00 CD2 B:HIS61 2.8 17.1 1.0 O B:HOH173 3.2 21.8 1.0 ND1 B:HIS64 3.4 28.3 1.0 NE2 B:HIS61 3.6 19.1 1.0 CG B:HIS61 3.8 18.6 1.0 CB B:HIS64 3.9 17.9 1.0 CA B:HIS61 4.0 13.2 1.0 CG B:HIS64 4.1 18.4 1.0 CB B:HIS61 4.4 16.2 1.0 CE1 B:HIS64 4.5 21.9 1.0 O B:HIS61 4.7 14.6 1.0 CE1 B:HIS61 4.8 20.6 1.0 N B:HIS61 4.8 12.8 1.0 O B:ASP60 4.8 13.2 1.0 ND1 B:HIS61 4.9 19.3 1.0 C B:HIS61 4.9 16.1 1.0 O B:HOH167 5.0 15.2 1.0

O.J.Hamming, G.Lutfalla, J.P.Levraud, R.Hartmann. Crystal Structure of Zebrafish Interferons I and II Reveals Conservation of Type I Interferon Structure in Vertebrates. J.Virol. V. 85 8181 2011.
ISSN: ISSN 0022-538X
PubMed: 21653665
DOI: 10.1128/JVI.00521-11